miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33072 3' -55 NC_007497.1 + 33433 0.65 0.689962
Target:  5'- -cCAGCGCagGCGCauUGACGCCGauacgcgcGACCu -3'
miRNA:   3'- cuGUUGUGa-UGCG--ACUGCGGC--------CUGGu -5'
33072 3' -55 NC_007497.1 + 16646 0.66 0.678855
Target:  5'- uGGCAacucGCGCaUGCGCU-ACGCCGGgagcgcGCCGc -3'
miRNA:   3'- -CUGU----UGUG-AUGCGAcUGCGGCC------UGGU- -5'
33072 3' -55 NC_007497.1 + 16154 0.66 0.656512
Target:  5'- aACGGCGUUGCGCUGAUcCCGGcacgcACCGa -3'
miRNA:   3'- cUGUUGUGAUGCGACUGcGGCC-----UGGU- -5'
33072 3' -55 NC_007497.1 + 30718 0.66 0.6453
Target:  5'- cGCGACACgacGCGCUGucaGCUGGcCCc -3'
miRNA:   3'- cUGUUGUGa--UGCGACug-CGGCCuGGu -5'
33072 3' -55 NC_007497.1 + 14883 0.66 0.634075
Target:  5'- -uCGcCGCcgACGCUGAUGCCGGAaCGa -3'
miRNA:   3'- cuGUuGUGa-UGCGACUGCGGCCUgGU- -5'
33072 3' -55 NC_007497.1 + 14099 0.66 0.634075
Target:  5'- --aAACcuGCUGCGUgGACGCCGGcgGCCu -3'
miRNA:   3'- cugUUG--UGAUGCGaCUGCGGCC--UGGu -5'
33072 3' -55 NC_007497.1 + 43798 0.67 0.611631
Target:  5'- aACGACGCU-CGaCUGACGC-GGugCGu -3'
miRNA:   3'- cUGUUGUGAuGC-GACUGCGgCCugGU- -5'
33072 3' -55 NC_007497.1 + 8769 0.67 0.58926
Target:  5'- cGCaAACACUucuuCGgaGACGCCGG-CCu -3'
miRNA:   3'- cUG-UUGUGAu---GCgaCUGCGGCCuGGu -5'
33072 3' -55 NC_007497.1 + 8899 0.67 0.585916
Target:  5'- -uCGGCACUAgagccgauccgugcCGUUGAgGCCgGGACCGg -3'
miRNA:   3'- cuGUUGUGAU--------------GCGACUgCGG-CCUGGU- -5'
33072 3' -55 NC_007497.1 + 44538 0.67 0.578126
Target:  5'- -cCGGCuuCUGgGCUGGCGCCGGcuGCUg -3'
miRNA:   3'- cuGUUGu-GAUgCGACUGCGGCC--UGGu -5'
33072 3' -55 NC_007497.1 + 32058 0.68 0.556006
Target:  5'- uACGACGCUGCGUguGCGCaaGGCCGg -3'
miRNA:   3'- cUGUUGUGAUGCGacUGCGgcCUGGU- -5'
33072 3' -55 NC_007497.1 + 32333 0.68 0.511514
Target:  5'- uGAUAGC-CUcgagcaaACGCagGACGCCGGGCUu -3'
miRNA:   3'- -CUGUUGuGA-------UGCGa-CUGCGGCCUGGu -5'
33072 3' -55 NC_007497.1 + 41091 0.69 0.50194
Target:  5'- cGCcGCGCUgauccgcuucGCGgUGACGCCGGugCc -3'
miRNA:   3'- cUGuUGUGA----------UGCgACUGCGGCCugGu -5'
33072 3' -55 NC_007497.1 + 34337 0.69 0.491395
Target:  5'- uGCuuCACU-CGCUGGCGCUcGACCu -3'
miRNA:   3'- cUGuuGUGAuGCGACUGCGGcCUGGu -5'
33072 3' -55 NC_007497.1 + 21684 0.69 0.491395
Target:  5'- uGACGACGCcgcCGCUGAuCGCUGGAa-- -3'
miRNA:   3'- -CUGUUGUGau-GCGACU-GCGGCCUggu -5'
33072 3' -55 NC_007497.1 + 16521 0.7 0.440326
Target:  5'- uGACcGCACUGCGCaaguucgcgGACGCCGG-Ca- -3'
miRNA:   3'- -CUGuUGUGAUGCGa--------CUGCGGCCuGgu -5'
33072 3' -55 NC_007497.1 + 33065 0.7 0.420757
Target:  5'- cGCGAC-CUcuCGCUGACGCuCGGACg- -3'
miRNA:   3'- cUGUUGuGAu-GCGACUGCG-GCCUGgu -5'
33072 3' -55 NC_007497.1 + 22431 0.7 0.404543
Target:  5'- uGACAAC-CUugGCcaugcgaUcggugguauuagcccGACGCCGGACCAa -3'
miRNA:   3'- -CUGUUGuGAugCG-------A---------------CUGCGGCCUGGU- -5'
33072 3' -55 NC_007497.1 + 34849 0.7 0.401722
Target:  5'- aGCGACGCgucGCGUUGGaggcCGCCGcGGCCAa -3'
miRNA:   3'- cUGUUGUGa--UGCGACU----GCGGC-CUGGU- -5'
33072 3' -55 NC_007497.1 + 14937 0.7 0.401722
Target:  5'- cGAuCGACGCgGCGCUGAUcaaaGCCGG-CCGg -3'
miRNA:   3'- -CU-GUUGUGaUGCGACUG----CGGCCuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.