miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33072 5' -51 NC_007497.1 + 11708 0.66 0.875223
Target:  5'- gCGCGAgUGaaGCAUCGAUA--GCCGAUg -3'
miRNA:   3'- -GCGCU-AUgcCGUAGUUGUaaCGGCUA- -5'
33072 5' -51 NC_007497.1 + 28784 0.66 0.875223
Target:  5'- gGCuGAUGCGGgcUCAACAUUugcgcgacaccGCCGAg -3'
miRNA:   3'- gCG-CUAUGCCguAGUUGUAA-----------CGGCUa -5'
33072 5' -51 NC_007497.1 + 27606 0.66 0.875223
Target:  5'- uCGCGAgcguguuccGCGGCAUCGccuACuggggGCCGGg -3'
miRNA:   3'- -GCGCUa--------UGCCGUAGU---UGuaa--CGGCUa -5'
33072 5' -51 NC_007497.1 + 2891 0.66 0.875223
Target:  5'- aCGCGGUGCuGGCG-CAugG-UGCgGAUa -3'
miRNA:   3'- -GCGCUAUG-CCGUaGUugUaACGgCUA- -5'
33072 5' -51 NC_007497.1 + 38415 0.66 0.874403
Target:  5'- aGCGAgaugcgcauucgcUACGGCgAUCAACuguacgacaucGUUGCCGu- -3'
miRNA:   3'- gCGCU-------------AUGCCG-UAGUUG-----------UAACGGCua -5'
33072 5' -51 NC_007497.1 + 14733 0.66 0.86689
Target:  5'- gCGCGGagcAUGGCGUCGGCGau-CCGAUa -3'
miRNA:   3'- -GCGCUa--UGCCGUAGUUGUaacGGCUA- -5'
33072 5' -51 NC_007497.1 + 36840 0.66 0.86689
Target:  5'- gCGCGAgGCGGCG--GGCGUcgaGCCGGa -3'
miRNA:   3'- -GCGCUaUGCCGUagUUGUAa--CGGCUa -5'
33072 5' -51 NC_007497.1 + 42834 0.66 0.866041
Target:  5'- cCGCGAUGCGGCGUUccgucgucuugauGGCuc--CCGAg -3'
miRNA:   3'- -GCGCUAUGCCGUAG-------------UUGuaacGGCUa -5'
33072 5' -51 NC_007497.1 + 36119 0.66 0.858284
Target:  5'- cCGCuGAUGCGGCAUUuGCGUcgaaUGCggCGAg -3'
miRNA:   3'- -GCG-CUAUGCCGUAGuUGUA----ACG--GCUa -5'
33072 5' -51 NC_007497.1 + 23141 0.66 0.858284
Target:  5'- gGCGAUGCgGGCAcggUCAGCGUauuccGCCa-- -3'
miRNA:   3'- gCGCUAUG-CCGU---AGUUGUAa----CGGcua -5'
33072 5' -51 NC_007497.1 + 36944 0.66 0.840294
Target:  5'- gGCGGggugGCGGCA-CGAauucaUGCCGAUg -3'
miRNA:   3'- gCGCUa---UGCCGUaGUUgua--ACGGCUA- -5'
33072 5' -51 NC_007497.1 + 34093 0.67 0.830928
Target:  5'- -uCGAUACGGCAggGGCcgcgGCCGAc -3'
miRNA:   3'- gcGCUAUGCCGUagUUGuaa-CGGCUa -5'
33072 5' -51 NC_007497.1 + 14900 0.67 0.830928
Target:  5'- gGCGAUGCGGCGaaCAGCGUaG-CGAg -3'
miRNA:   3'- gCGCUAUGCCGUa-GUUGUAaCgGCUa -5'
33072 5' -51 NC_007497.1 + 35634 0.67 0.82133
Target:  5'- aCGCGAU-CGcGCG-CGGCAUggGCCGGg -3'
miRNA:   3'- -GCGCUAuGC-CGUaGUUGUAa-CGGCUa -5'
33072 5' -51 NC_007497.1 + 41016 0.67 0.810517
Target:  5'- aCGUGAUggggcuuGCGGCGUCGGCA--GCCu-- -3'
miRNA:   3'- -GCGCUA-------UGCCGUAGUUGUaaCGGcua -5'
33072 5' -51 NC_007497.1 + 5809 0.67 0.791256
Target:  5'- uGCGGUGCGGUugaaucccUCGACGgcucggUGCCGu- -3'
miRNA:   3'- gCGCUAUGCCGu-------AGUUGUa-----ACGGCua -5'
33072 5' -51 NC_007497.1 + 35423 0.68 0.771329
Target:  5'- gGCGAgucaucgcuugcccgACGGUcacAUCGACcUUGCCGAa -3'
miRNA:   3'- gCGCUa--------------UGCCG---UAGUUGuAACGGCUa -5'
33072 5' -51 NC_007497.1 + 36616 0.68 0.770264
Target:  5'- gGCGAccgcUugGGCAUCGcUGUcGCCGAa -3'
miRNA:   3'- gCGCU----AugCCGUAGUuGUAaCGGCUa -5'
33072 5' -51 NC_007497.1 + 36178 0.68 0.737621
Target:  5'- gCGUGGgcUGGCGUCGACg--GCCGGc -3'
miRNA:   3'- -GCGCUauGCCGUAGUUGuaaCGGCUa -5'
33072 5' -51 NC_007497.1 + 33670 0.69 0.726485
Target:  5'- gCGCGAgcuCGcGCGUCAG-AUUGUCGAUg -3'
miRNA:   3'- -GCGCUau-GC-CGUAGUUgUAACGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.