miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33072 5' -51 NC_007497.1 + 31588 1.06 0.002931
Target:  5'- aCGCGAUACGGCAUCAACAUUGCCGAUc -3'
miRNA:   3'- -GCGCUAUGCCGUAGUUGUAACGGCUA- -5'
33072 5' -51 NC_007497.1 + 4260 0.8 0.193096
Target:  5'- aCGCGAUgaGCGGCGUguGCGUcGCCGAUc -3'
miRNA:   3'- -GCGCUA--UGCCGUAguUGUAaCGGCUA- -5'
33072 5' -51 NC_007497.1 + 3834 0.78 0.261838
Target:  5'- uCGUcaaAUGCGGCGUCGACGUgcgGCCGAUu -3'
miRNA:   3'- -GCGc--UAUGCCGUAGUUGUAa--CGGCUA- -5'
33072 5' -51 NC_007497.1 + 35412 0.75 0.349221
Target:  5'- gCGCGAaGCugucucaaGGCAUCAucuACGUUGCCGAa -3'
miRNA:   3'- -GCGCUaUG--------CCGUAGU---UGUAACGGCUa -5'
33072 5' -51 NC_007497.1 + 36529 0.73 0.476631
Target:  5'- gGCGcUGCGGC-UCGGCAggacgcUUGCCGAg -3'
miRNA:   3'- gCGCuAUGCCGuAGUUGU------AACGGCUa -5'
33072 5' -51 NC_007497.1 + 26856 0.72 0.53034
Target:  5'- gGCGAUcgacgACGGCGcgcagauUCAGCAgcgGCCGGUg -3'
miRNA:   3'- gCGCUA-----UGCCGU-------AGUUGUaa-CGGCUA- -5'
33072 5' -51 NC_007497.1 + 7461 0.7 0.623134
Target:  5'- gCGUGAUAUGGaCAUCGuucgccGCAUUGCCc-- -3'
miRNA:   3'- -GCGCUAUGCC-GUAGU------UGUAACGGcua -5'
33072 5' -51 NC_007497.1 + 39641 0.7 0.634743
Target:  5'- aGCGGUGCGGCGgcaGACAUcacGUCGGa -3'
miRNA:   3'- gCGCUAUGCCGUag-UUGUAa--CGGCUa -5'
33072 5' -51 NC_007497.1 + 31175 0.7 0.646349
Target:  5'- cCGCGAacgucggGCGGC-UCAAaaauUUGCCGAUa -3'
miRNA:   3'- -GCGCUa------UGCCGuAGUUgu--AACGGCUA- -5'
33072 5' -51 NC_007497.1 + 2416 0.7 0.646349
Target:  5'- cCGCGAUGuCGcGC-UUAGCAgUGCCGGUg -3'
miRNA:   3'- -GCGCUAU-GC-CGuAGUUGUaACGGCUA- -5'
33072 5' -51 NC_007497.1 + 8746 0.69 0.703914
Target:  5'- aGCGAUAcCGGCGcaGGCAagcugUGCCGAc -3'
miRNA:   3'- gCGCUAU-GCCGUagUUGUa----ACGGCUa -5'
33072 5' -51 NC_007497.1 + 774 0.69 0.723124
Target:  5'- uGCGcucgauugcagcccAUGCGGCAUCGAUcacGCCGAc -3'
miRNA:   3'- gCGC--------------UAUGCCGUAGUUGuaaCGGCUa -5'
33072 5' -51 NC_007497.1 + 33670 0.69 0.726485
Target:  5'- gCGCGAgcuCGcGCGUCAG-AUUGUCGAUg -3'
miRNA:   3'- -GCGCUau-GC-CGUAGUUgUAACGGCUA- -5'
33072 5' -51 NC_007497.1 + 36178 0.68 0.737621
Target:  5'- gCGUGGgcUGGCGUCGACg--GCCGGc -3'
miRNA:   3'- -GCGCUauGCCGUAGUUGuaaCGGCUa -5'
33072 5' -51 NC_007497.1 + 36616 0.68 0.770264
Target:  5'- gGCGAccgcUugGGCAUCGcUGUcGCCGAa -3'
miRNA:   3'- gCGCU----AugCCGUAGUuGUAaCGGCUa -5'
33072 5' -51 NC_007497.1 + 35423 0.68 0.771329
Target:  5'- gGCGAgucaucgcuugcccgACGGUcacAUCGACcUUGCCGAa -3'
miRNA:   3'- gCGCUa--------------UGCCG---UAGUUGuAACGGCUa -5'
33072 5' -51 NC_007497.1 + 5809 0.67 0.791256
Target:  5'- uGCGGUGCGGUugaaucccUCGACGgcucggUGCCGu- -3'
miRNA:   3'- gCGCUAUGCCGu-------AGUUGUa-----ACGGCua -5'
33072 5' -51 NC_007497.1 + 41016 0.67 0.810517
Target:  5'- aCGUGAUggggcuuGCGGCGUCGGCA--GCCu-- -3'
miRNA:   3'- -GCGCUA-------UGCCGUAGUUGUaaCGGcua -5'
33072 5' -51 NC_007497.1 + 35634 0.67 0.82133
Target:  5'- aCGCGAU-CGcGCG-CGGCAUggGCCGGg -3'
miRNA:   3'- -GCGCUAuGC-CGUaGUUGUAa-CGGCUa -5'
33072 5' -51 NC_007497.1 + 14900 0.67 0.830928
Target:  5'- gGCGAUGCGGCGaaCAGCGUaG-CGAg -3'
miRNA:   3'- gCGCUAUGCCGUa-GUUGUAaCgGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.