miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33073 3' -53.5 NC_007497.1 + 36115 0.66 0.746483
Target:  5'- uGAUGCggcauUUGCGUCGaaUGCGGCGAg -3'
miRNA:   3'- -CUACGac---AGCGUAGCaaGCGUCGCUg -5'
33073 3' -53.5 NC_007497.1 + 43906 0.66 0.734535
Target:  5'- -cUGUUGUCGCGaccuccuUCG-UCGgGGCGAg -3'
miRNA:   3'- cuACGACAGCGU-------AGCaAGCgUCGCUg -5'
33073 3' -53.5 NC_007497.1 + 34180 0.66 0.724659
Target:  5'- --aGCUugCGCGacUCGUcgacguguucgUCGCGGCGACg -3'
miRNA:   3'- cuaCGAcaGCGU--AGCA-----------AGCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 34872 0.66 0.713593
Target:  5'- --gGC-GUCGCuggCGUUggcgcaGCAGCGACg -3'
miRNA:   3'- cuaCGaCAGCGua-GCAAg-----CGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 24082 0.66 0.711368
Target:  5'- aAUGCgcauauccgacUCGCGcUGUUCGCGGCGAUc -3'
miRNA:   3'- cUACGac---------AGCGUaGCAAGCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 27143 0.67 0.68896
Target:  5'- cGcgGUUGUCGUGUUGgacaaggcgccCGCAGUGGCg -3'
miRNA:   3'- -CuaCGACAGCGUAGCaa---------GCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 10954 0.67 0.668588
Target:  5'- -uUGCUGgggcgguagCGCAgCGUUCGguGCG-Cg -3'
miRNA:   3'- cuACGACa--------GCGUaGCAAGCguCGCuG- -5'
33073 3' -53.5 NC_007497.1 + 14130 0.67 0.657214
Target:  5'- gGAUGCU-UCGCucgaccuUCGUgagCGUGGCGAUg -3'
miRNA:   3'- -CUACGAcAGCGu------AGCAa--GCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 44659 0.68 0.634403
Target:  5'- cGAUGCUGUCGCGgggcUGUagccUGCcGCGAUg -3'
miRNA:   3'- -CUACGACAGCGUa---GCAa---GCGuCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 41078 0.68 0.600197
Target:  5'- cGAUGUUGcgaagCGCcgCGcugauccgcUUCGCGGUGACg -3'
miRNA:   3'- -CUACGACa----GCGuaGC---------AAGCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 15791 0.68 0.58544
Target:  5'- --cGCcGUCGCA-CGUUgaacaggucugcagCGCAGCGGCc -3'
miRNA:   3'- cuaCGaCAGCGUaGCAA--------------GCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 33395 0.68 0.577522
Target:  5'- --aGCUG-CGCGUCGag-GCGGUGGCg -3'
miRNA:   3'- cuaCGACaGCGUAGCaagCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 30199 0.69 0.55504
Target:  5'- -cUGCUGUcCGCcgaaAUCGa--GCGGCGACg -3'
miRNA:   3'- cuACGACA-GCG----UAGCaagCGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 35372 0.69 0.550573
Target:  5'- --cGCcgGUCGCuUCGUUCGCucgaccaacguacGCGACg -3'
miRNA:   3'- cuaCGa-CAGCGuAGCAAGCGu------------CGCUG- -5'
33073 3' -53.5 NC_007497.1 + 22851 0.69 0.543894
Target:  5'- -uUGCgGcCGcCAUCGUUCGCGcgcgcuGCGACg -3'
miRNA:   3'- cuACGaCaGC-GUAGCAAGCGU------CGCUG- -5'
33073 3' -53.5 NC_007497.1 + 26452 0.7 0.51419
Target:  5'- cGGUGgaGUCguuuuccccaucaGCAUCGUUUccgcgcugacggccgGCAGCGACg -3'
miRNA:   3'- -CUACgaCAG-------------CGUAGCAAG---------------CGUCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 2440 0.7 0.478826
Target:  5'- cGGUGCgc-CGCugggCGUUCGCgcGGCGACg -3'
miRNA:   3'- -CUACGacaGCGua--GCAAGCG--UCGCUG- -5'
33073 3' -53.5 NC_007497.1 + 30784 0.72 0.379868
Target:  5'- --aGCUGacagCGCGUCGUgUCGCGGCGu- -3'
miRNA:   3'- cuaCGACa---GCGUAGCA-AGCGUCGCug -5'
33073 3' -53.5 NC_007497.1 + 32768 1.08 0.001125
Target:  5'- gGAUGCUGUCGCAUCGUUCGCAGCGACc -3'
miRNA:   3'- -CUACGACAGCGUAGCAAGCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.