miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 3' -62.7 NC_007497.1 + 13157 0.66 0.308447
Target:  5'- cGGUgcCGUGCGuGGucuucuuCUGGCCGCGCa- -3'
miRNA:   3'- uCCA--GCGCGCuCUc------GACCGGCGCGac -5'
33074 3' -62.7 NC_007497.1 + 36074 0.66 0.301087
Target:  5'- cGGUaCGCGCGAucGa-GGCUGCGCg- -3'
miRNA:   3'- uCCA-GCGCGCUcuCgaCCGGCGCGac -5'
33074 3' -62.7 NC_007497.1 + 41723 0.66 0.293864
Target:  5'- gAGGUCGCGCGcauGuacGgUGuGCCGCGUc- -3'
miRNA:   3'- -UCCAGCGCGCu--Cu--CgAC-CGGCGCGac -5'
33074 3' -62.7 NC_007497.1 + 23268 0.66 0.279824
Target:  5'- cGGG-CGgcUGCGAcGAGCUGGUCGacaCGCUGc -3'
miRNA:   3'- -UCCaGC--GCGCU-CUCGACCGGC---GCGAC- -5'
33074 3' -62.7 NC_007497.1 + 23860 0.66 0.277764
Target:  5'- cAGGcgCGCGCGGcacucauccggcguGAagcGCUGGCCgGCGCg- -3'
miRNA:   3'- -UCCa-GCGCGCU--------------CU---CGACCGG-CGCGac -5'
33074 3' -62.7 NC_007497.1 + 3563 0.66 0.273006
Target:  5'- --cUCGUGCGccucGAGCUGGCCGUucGCg- -3'
miRNA:   3'- uccAGCGCGCu---CUCGACCGGCG--CGac -5'
33074 3' -62.7 NC_007497.1 + 42013 0.67 0.240906
Target:  5'- gGGGUCuCGCGAGucaagcuGuCUGGaaaUGCGCUGg -3'
miRNA:   3'- -UCCAGcGCGCUCu------C-GACCg--GCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 6188 0.67 0.240906
Target:  5'- uGGG-CGCGCGAGcGC-GGUuaCGCGCUu -3'
miRNA:   3'- -UCCaGCGCGCUCuCGaCCG--GCGCGAc -5'
33074 3' -62.7 NC_007497.1 + 3291 0.67 0.234877
Target:  5'- cGGUUGCGUGuGcGCUGaacaUCGCGCUGg -3'
miRNA:   3'- uCCAGCGCGCuCuCGACc---GGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 40141 0.68 0.201321
Target:  5'- aAGG-CGCacgugaagcgcgGCGAcGuGCaGGCCGCGCUGa -3'
miRNA:   3'- -UCCaGCG------------CGCU-CuCGaCCGGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 37794 0.69 0.172011
Target:  5'- uGGuGUCGCGCGuGAGC-GGCaCGCGagacaUGg -3'
miRNA:   3'- -UC-CAGCGCGCuCUCGaCCG-GCGCg----AC- -5'
33074 3' -62.7 NC_007497.1 + 39236 0.7 0.146571
Target:  5'- aAGGUCGCcgccaGCGAGuaAGCgucgGGCCGuCGCg- -3'
miRNA:   3'- -UCCAGCG-----CGCUC--UCGa---CCGGC-GCGac -5'
33074 3' -62.7 NC_007497.1 + 23232 0.7 0.14268
Target:  5'- gAGcG-CGCGgGAGAGCUGGCgGaauaCGCUGa -3'
miRNA:   3'- -UC-CaGCGCgCUCUCGACCGgC----GCGAC- -5'
33074 3' -62.7 NC_007497.1 + 35814 0.7 0.138883
Target:  5'- -cGUCGCGuCGAGcGGCU-GCCGCGUUGc -3'
miRNA:   3'- ucCAGCGC-GCUC-UCGAcCGGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 33513 0.71 0.128043
Target:  5'- cAGGUCGCGCGuaucGGCgucaaUGcGCCuGCGCUGg -3'
miRNA:   3'- -UCCAGCGCGCuc--UCG-----AC-CGG-CGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 15243 0.71 0.124607
Target:  5'- aGGGUCGUguacgGCGAGAGCg---CGCGCUGg -3'
miRNA:   3'- -UCCAGCG-----CGCUCUCGaccgGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 34915 0.71 0.124607
Target:  5'- ---gCGCGCGAGAccGC-GGCCGCGCa- -3'
miRNA:   3'- uccaGCGCGCUCU--CGaCCGGCGCGac -5'
33074 3' -62.7 NC_007497.1 + 42432 0.71 0.120268
Target:  5'- cGGGUCGCgagacGCGAGcGCUGcgaaacauggcgguGCUGCGCUGc -3'
miRNA:   3'- -UCCAGCG-----CGCUCuCGAC--------------CGGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 41432 0.76 0.052376
Target:  5'- gAGGUC-CGCGAGAuGCUGGauuugccUCGCGCUGa -3'
miRNA:   3'- -UCCAGcGCGCUCU-CGACC-------GGCGCGAC- -5'
33074 3' -62.7 NC_007497.1 + 33117 1.07 0.00019
Target:  5'- gAGGUCGCGCGAGAGCUGGCCGCGCUGu -3'
miRNA:   3'- -UCCAGCGCGCUCUCGACCGGCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.