miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 5' -54.2 NC_007497.1 + 23269 0.67 0.626989
Target:  5'- gGGCGGC-UGCGaCGAGCUGGucgacacgcugcugCAGGCu -3'
miRNA:   3'- -CUGUUGcGCGC-GCUCGACUua------------GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 8195 0.67 0.614557
Target:  5'- aGACGACGCGCGaucGCgacuucgcUCAGGCc -3'
miRNA:   3'- -CUGUUGCGCGCgcuCGacuu----AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 6193 0.67 0.614557
Target:  5'- aGGCGugGgCGCGCGAGCgcGGUUAcGCg -3'
miRNA:   3'- -CUGUugC-GCGCGCUCGacUUAGUcCG- -5'
33074 5' -54.2 NC_007497.1 + 33460 0.68 0.603271
Target:  5'- gGGCGGCGCcCGUuccGAGCcgGAAagCAGGCg -3'
miRNA:   3'- -CUGUUGCGcGCG---CUCGa-CUUa-GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 39945 0.68 0.603271
Target:  5'- cGGCugGACGCG-GCaGAGCUGGcgCAucGGCg -3'
miRNA:   3'- -CUG--UUGCGCgCG-CUCGACUuaGU--CCG- -5'
33074 5' -54.2 NC_007497.1 + 33179 0.68 0.599889
Target:  5'- cACGGCGCgaucguaggccGCGCGAaucgacgccugaucGC-GGAUCAGGCu -3'
miRNA:   3'- cUGUUGCG-----------CGCGCU--------------CGaCUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 10164 0.68 0.580787
Target:  5'- cGGCAGCcuGCGCGCGcAGaUGGcUUGGGCa -3'
miRNA:   3'- -CUGUUG--CGCGCGC-UCgACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 42234 0.68 0.580787
Target:  5'- uGCAACuGCGCGCGcugcucgacGGC-GAGUCGauGGCg -3'
miRNA:   3'- cUGUUG-CGCGCGC---------UCGaCUUAGU--CCG- -5'
33074 5' -54.2 NC_007497.1 + 40124 0.68 0.569608
Target:  5'- cGGCGACGUGCaggcCGcGCUGAAcaaGGGCg -3'
miRNA:   3'- -CUGUUGCGCGc---GCuCGACUUag-UCCG- -5'
33074 5' -54.2 NC_007497.1 + 34902 0.69 0.547419
Target:  5'- cGGCcGCGCaGgGCGAGCUcGAgcGUCcgAGGCg -3'
miRNA:   3'- -CUGuUGCG-CgCGCUCGA-CU--UAG--UCCG- -5'
33074 5' -54.2 NC_007497.1 + 2034 0.69 0.536426
Target:  5'- gGGCGcccguGCGCGCGCGAaagaUGGGagAGGCa -3'
miRNA:   3'- -CUGU-----UGCGCGCGCUcg--ACUUagUCCG- -5'
33074 5' -54.2 NC_007497.1 + 28574 0.69 0.536426
Target:  5'- cGACcGCGCGCGCGAagguGCUcGAcAUCAucGGUg -3'
miRNA:   3'- -CUGuUGCGCGCGCU----CGA-CU-UAGU--CCG- -5'
33074 5' -54.2 NC_007497.1 + 33739 0.69 0.525511
Target:  5'- cGACAAucUGaCGCGCGAGCucgcgcugaUGAAUCAG-Ca -3'
miRNA:   3'- -CUGUU--GC-GCGCGCUCG---------ACUUAGUCcG- -5'
33074 5' -54.2 NC_007497.1 + 34493 0.7 0.482767
Target:  5'- aGCAGCGCGaCGuCGAGuUUGAucgacaugCAGGCg -3'
miRNA:   3'- cUGUUGCGC-GC-GCUC-GACUua------GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 10913 0.7 0.451838
Target:  5'- gGGCGGCGaaCGUG-GAGCuaggaaUGGAUCAGGCg -3'
miRNA:   3'- -CUGUUGC--GCGCgCUCG------ACUUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 14446 0.7 0.451838
Target:  5'- cGCAggGCGgGCGCG-GUUGA-UCAGGUg -3'
miRNA:   3'- cUGU--UGCgCGCGCuCGACUuAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 35424 0.71 0.431832
Target:  5'- cGAcCGGCGCcaGCGCGaAGCUGucUCAaGGCa -3'
miRNA:   3'- -CU-GUUGCG--CGCGC-UCGACuuAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 33826 0.71 0.401874
Target:  5'- uGCGGgGCGCGCGGaugcauacaagucGCUGGAaaAGGCg -3'
miRNA:   3'- cUGUUgCGCGCGCU-------------CGACUUagUCCG- -5'
33074 5' -54.2 NC_007497.1 + 23773 0.71 0.389709
Target:  5'- cACGGCgGC-CGCGAGCUGGuacguguggcccuUCAGGCu -3'
miRNA:   3'- cUGUUG-CGcGCGCUCGACUu------------AGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 42172 0.72 0.375073
Target:  5'- aGCAGCGCGCGC-AGUUGcAUCAaGCu -3'
miRNA:   3'- cUGUUGCGCGCGcUCGACuUAGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.