miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33075 3' -59.4 NC_007497.1 + 32452 0.65 0.474787
Target:  5'- aCGUGGCCgcCGGUCGCaagauggaacCCGUacgcguugccgccgGCGGCg -3'
miRNA:   3'- -GCGCCGGauGCUAGCGc---------GGCA--------------CGUCG- -5'
33075 3' -59.4 NC_007497.1 + 34714 0.66 0.467851
Target:  5'- aGCGcGCCgaACGAg-GCGCCaccGCGGCg -3'
miRNA:   3'- gCGC-CGGa-UGCUagCGCGGca-CGUCG- -5'
33075 3' -59.4 NC_007497.1 + 23977 0.66 0.461948
Target:  5'- -aCGGCCUGCaauggcgacacgaagGAcgugCGCGCCG-GcCAGCg -3'
miRNA:   3'- gcGCCGGAUG---------------CUa---GCGCGGCaC-GUCG- -5'
33075 3' -59.4 NC_007497.1 + 23567 0.66 0.458034
Target:  5'- gCGCGGCg-GCGGgcgccgGCGUCGUGCAc- -3'
miRNA:   3'- -GCGCCGgaUGCUag----CGCGGCACGUcg -5'
33075 3' -59.4 NC_007497.1 + 41010 0.66 0.458034
Target:  5'- uGgGGCUUGCG---GCGUCG-GCAGCc -3'
miRNA:   3'- gCgCCGGAUGCuagCGCGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 752 0.66 0.458034
Target:  5'- aGCaGuCCUGCGGUCgauagcuuGCGCuCGauUGCAGCc -3'
miRNA:   3'- gCGcC-GGAUGCUAG--------CGCG-GC--ACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 23830 0.66 0.447365
Target:  5'- uCGCGGCCgcCGugagcuUCGCauacaacGUCG-GCAGCg -3'
miRNA:   3'- -GCGCCGGauGCu-----AGCG-------CGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 37905 0.66 0.438738
Target:  5'- -uCGGCCUgaGCGAUCGacgcucgaaCGCCG-GCcGCa -3'
miRNA:   3'- gcGCCGGA--UGCUAGC---------GCGGCaCGuCG- -5'
33075 3' -59.4 NC_007497.1 + 16741 0.66 0.438738
Target:  5'- aCGCGGUCacGCGAgcggCGCGCUcccgGcGUAGCg -3'
miRNA:   3'- -GCGCCGGa-UGCUa---GCGCGG----CaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 36409 0.66 0.429266
Target:  5'- uGCaGCg-AUGGUCGCGUCG-GCAGUu -3'
miRNA:   3'- gCGcCGgaUGCUAGCGCGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 793 0.66 0.429266
Target:  5'- uGCGGCau-CGAUCaCGCCGa-CGGCg -3'
miRNA:   3'- gCGCCGgauGCUAGcGCGGCacGUCG- -5'
33075 3' -59.4 NC_007497.1 + 1854 0.66 0.426448
Target:  5'- aGCGGCCggugcaucucggaacUGAUCGCcggccccauGCCGUGCuuucGCu -3'
miRNA:   3'- gCGCCGGau-------------GCUAGCG---------CGGCACGu---CG- -5'
33075 3' -59.4 NC_007497.1 + 34482 0.66 0.426448
Target:  5'- cCGCGccaagcgccaccguGCCgACGGUCGUcaggauGCCGgGCAGCc -3'
miRNA:   3'- -GCGC--------------CGGaUGCUAGCG------CGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 30791 0.67 0.410689
Target:  5'- uGgGGCCaGCuGAcagCGCGUCGUgucGCGGCg -3'
miRNA:   3'- gCgCCGGaUG-CUa--GCGCGGCA---CGUCG- -5'
33075 3' -59.4 NC_007497.1 + 43939 0.67 0.410689
Target:  5'- gGCGGCggggAUGAUcCGgGCCGaUGCAGa -3'
miRNA:   3'- gCGCCGga--UGCUA-GCgCGGC-ACGUCg -5'
33075 3' -59.4 NC_007497.1 + 43258 0.67 0.401589
Target:  5'- gGCGGCCUugACGAcuuauUgGgGCUcaGUGCGGUg -3'
miRNA:   3'- gCGCCGGA--UGCU-----AgCgCGG--CACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 8681 0.67 0.401589
Target:  5'- gCGuCGGCCgccCGGUCGUGUgGcUGCGGg -3'
miRNA:   3'- -GC-GCCGGau-GCUAGCGCGgC-ACGUCg -5'
33075 3' -59.4 NC_007497.1 + 22852 0.67 0.401589
Target:  5'- uGCGGCCgccaucguuCGcgCGCGCUGcgacguaacgaGCGGCa -3'
miRNA:   3'- gCGCCGGau-------GCuaGCGCGGCa----------CGUCG- -5'
33075 3' -59.4 NC_007497.1 + 18899 0.67 0.392619
Target:  5'- aGCGGCgaGCaaggugucGAUgGCGUCG-GCGGCu -3'
miRNA:   3'- gCGCCGgaUG--------CUAgCGCGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 42010 0.67 0.382904
Target:  5'- uCGCGcGCCggcaacuCGAUCuuguccccggucgGCGUCGUGUAGUc -3'
miRNA:   3'- -GCGC-CGGau-----GCUAG-------------CGCGGCACGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.