miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33075 3' -59.4 NC_007497.1 + 42010 0.67 0.382904
Target:  5'- uCGCGcGCCggcaacuCGAUCuuguccccggucgGCGUCGUGUAGUc -3'
miRNA:   3'- -GCGC-CGGau-----GCUAG-------------CGCGGCACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 4144 0.69 0.295562
Target:  5'- uCGCGGCaCUcgucgACGGUCaUGCCGccccgagcUGCGGCa -3'
miRNA:   3'- -GCGCCG-GA-----UGCUAGcGCGGC--------ACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 34851 0.68 0.325703
Target:  5'- gCGCGGCC-GCGGucUCGCGCgCGaucacgGCcGCa -3'
miRNA:   3'- -GCGCCGGaUGCU--AGCGCG-GCa-----CGuCG- -5'
33075 3' -59.4 NC_007497.1 + 4108 0.68 0.325703
Target:  5'- -cCGGCCcGCGcGUCGCGCaccGCAGCc -3'
miRNA:   3'- gcGCCGGaUGC-UAGCGCGgcaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 15566 0.68 0.32884
Target:  5'- gCGCGGCagugGCGAUCGCccuuuuucuggcgauGCagGUGguGCu -3'
miRNA:   3'- -GCGCCGga--UGCUAGCG---------------CGg-CACguCG- -5'
33075 3' -59.4 NC_007497.1 + 34571 0.68 0.333586
Target:  5'- aGCGaGCCUGCGcgggCGgcCGCCGUuugcgcgaccGCGGCa -3'
miRNA:   3'- gCGC-CGGAUGCua--GC--GCGGCA----------CGUCG- -5'
33075 3' -59.4 NC_007497.1 + 23627 0.68 0.358068
Target:  5'- aCGCGGCCgcCGGcCGUGaCCcacUGCGGCc -3'
miRNA:   3'- -GCGCCGGauGCUaGCGC-GGc--ACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 14322 0.67 0.375939
Target:  5'- cCGCGGCuCUGC-AUCGCGCaggaaagucgacgaaGUGCucGCc -3'
miRNA:   3'- -GCGCCG-GAUGcUAGCGCGg--------------CACGu-CG- -5'
33075 3' -59.4 NC_007497.1 + 214 0.67 0.37854
Target:  5'- cCGCGGUgcgcgacgaugugauCgcCGAUCGUGCCaaGCGGCu -3'
miRNA:   3'- -GCGCCG---------------GauGCUAGCGCGGcaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 40061 0.69 0.295562
Target:  5'- gCGCGGCCUgcACGucgcCGCGCuucaCGUGC-GCc -3'
miRNA:   3'- -GCGCCGGA--UGCua--GCGCG----GCACGuCG- -5'
33075 3' -59.4 NC_007497.1 + 33469 0.69 0.288374
Target:  5'- gCGCGGCCgacUGCGccAUCGUGUCGUcGUAuGCu -3'
miRNA:   3'- -GCGCCGG---AUGC--UAGCGCGGCA-CGU-CG- -5'
33075 3' -59.4 NC_007497.1 + 27069 0.69 0.281324
Target:  5'- uGCGggcGCCUuguccaacACGAcaacCGCGCCG-GCAGCg -3'
miRNA:   3'- gCGC---CGGA--------UGCUa---GCGCGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 34670 0.73 0.156306
Target:  5'- uCGCGcGCCUGCGucgcgaucgcuacuUCGCGCuCG-GCGGCc -3'
miRNA:   3'- -GCGC-CGGAUGCu-------------AGCGCG-GCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 519 0.72 0.191461
Target:  5'- uCGCGGCg-ACGAUCuGCGUaaUGCAGCc -3'
miRNA:   3'- -GCGCCGgaUGCUAG-CGCGgcACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 1437 0.72 0.201803
Target:  5'- gCGCGGCCacggaaagGCGAUCugcaCGCCGUGCu-- -3'
miRNA:   3'- -GCGCCGGa-------UGCUAGc---GCGGCACGucg -5'
33075 3' -59.4 NC_007497.1 + 3347 0.71 0.229795
Target:  5'- uGCGGCgCUccAgGAcaUCGaaaccaGCCGUGCGGCg -3'
miRNA:   3'- gCGCCG-GA--UgCU--AGCg-----CGGCACGUCG- -5'
33075 3' -59.4 NC_007497.1 + 3892 0.71 0.229795
Target:  5'- gCGCGGUCgucaucuuCGGUCGCgagucGUCGUGCAcGCg -3'
miRNA:   3'- -GCGCCGGau------GCUAGCG-----CGGCACGU-CG- -5'
33075 3' -59.4 NC_007497.1 + 2521 0.7 0.24812
Target:  5'- uGCGGuCCUGCcacuucugcccGGgcgugCGCGCCG-GCGGCc -3'
miRNA:   3'- gCGCC-GGAUG-----------CUa----GCGCGGCaCGUCG- -5'
33075 3' -59.4 NC_007497.1 + 34624 0.7 0.254491
Target:  5'- uGCGGCCaagccgGCGGUCGCcGCgGUGgcgccucguuCGGCg -3'
miRNA:   3'- gCGCCGGa-----UGCUAGCG-CGgCAC----------GUCG- -5'
33075 3' -59.4 NC_007497.1 + 38132 0.7 0.267636
Target:  5'- gCGCGcGCCUcgucccggaucACGuUCGCGCCGgcgaccGUGGCg -3'
miRNA:   3'- -GCGC-CGGA-----------UGCuAGCGCGGCa-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.