miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33075 5' -47.8 NC_007497.1 + 10729 0.66 0.979689
Target:  5'- aUGCgAUCGCGGccGCGAUCAuuuucggGAGCa -3'
miRNA:   3'- gGCGaUAGUGCUc-CGCUAGUua-----UUCG- -5'
33075 5' -47.8 NC_007497.1 + 42223 0.66 0.977059
Target:  5'- gCGCUG-CuCGAcGGCGAgUCGAUGGcGCg -3'
miRNA:   3'- gGCGAUaGuGCU-CCGCU-AGUUAUU-CG- -5'
33075 5' -47.8 NC_007497.1 + 32509 0.66 0.974187
Target:  5'- aCCgGCggccacGUCACGGGGCcgggcacGUCGAcGAGCg -3'
miRNA:   3'- -GG-CGa-----UAGUGCUCCGc------UAGUUaUUCG- -5'
33075 5' -47.8 NC_007497.1 + 15481 0.66 0.974187
Target:  5'- cCUGUUcaCAUGAGGCGAgCAG--GGCg -3'
miRNA:   3'- -GGCGAuaGUGCUCCGCUaGUUauUCG- -5'
33075 5' -47.8 NC_007497.1 + 33096 0.66 0.971062
Target:  5'- gCGCUGUCGauGGGCGA-CAAcgcgcgcGAGCu -3'
miRNA:   3'- gGCGAUAGUgcUCCGCUaGUUa------UUCG- -5'
33075 5' -47.8 NC_007497.1 + 44040 0.66 0.971062
Target:  5'- gCCGgaAUCAUGcugacGGCGGUCAuuuuGUGuuGGCg -3'
miRNA:   3'- -GGCgaUAGUGCu----CCGCUAGU----UAU--UCG- -5'
33075 5' -47.8 NC_007497.1 + 1008 0.66 0.967675
Target:  5'- aCCGCg--UACGGcGcGCGAUCAucgaAGGCg -3'
miRNA:   3'- -GGCGauaGUGCU-C-CGCUAGUua--UUCG- -5'
33075 5' -47.8 NC_007497.1 + 18513 0.67 0.964016
Target:  5'- aUCGCUAgug-GGGGCGGUCuugaGGGCa -3'
miRNA:   3'- -GGCGAUagugCUCCGCUAGuua-UUCG- -5'
33075 5' -47.8 NC_007497.1 + 43905 0.67 0.963635
Target:  5'- gCUGUUGUCGCGAccuccuucgucggGGCGAgaaUCAGgu-GCu -3'
miRNA:   3'- -GGCGAUAGUGCU-------------CCGCU---AGUUauuCG- -5'
33075 5' -47.8 NC_007497.1 + 1596 0.67 0.960077
Target:  5'- uCCGUcAUCGCGAuucGGUGAccggCGcgGAGCu -3'
miRNA:   3'- -GGCGaUAGUGCU---CCGCUa---GUuaUUCG- -5'
33075 5' -47.8 NC_007497.1 + 14211 0.67 0.960077
Target:  5'- gCGCUGUCAUGucaucGGCGuUCAu---GCg -3'
miRNA:   3'- gGCGAUAGUGCu----CCGCuAGUuauuCG- -5'
33075 5' -47.8 NC_007497.1 + 17776 0.67 0.960077
Target:  5'- gCCGUcGUCGUGAagGGCGAUuccgucgcgCGAUGAGCu -3'
miRNA:   3'- -GGCGaUAGUGCU--CCGCUA---------GUUAUUCG- -5'
33075 5' -47.8 NC_007497.1 + 27208 0.67 0.957575
Target:  5'- aUCGCUAUUgccgauccgcgcaagGCGGGGCGGcgCAuc-GGCg -3'
miRNA:   3'- -GGCGAUAG---------------UGCUCCGCUa-GUuauUCG- -5'
33075 5' -47.8 NC_007497.1 + 21764 0.67 0.955849
Target:  5'- uCCGCUgcguuuccagcgAUCAgCGGcGGCGucGUCAAUAggGGCg -3'
miRNA:   3'- -GGCGA------------UAGU-GCU-CCGC--UAGUUAU--UCG- -5'
33075 5' -47.8 NC_007497.1 + 14683 0.67 0.955849
Target:  5'- uCCGCg--CGCGAGGUGA------AGCa -3'
miRNA:   3'- -GGCGauaGUGCUCCGCUaguuauUCG- -5'
33075 5' -47.8 NC_007497.1 + 40437 0.67 0.955849
Target:  5'- gCGCUGUucCGCGAGGC-AUCAuuuccGUccGCg -3'
miRNA:   3'- gGCGAUA--GUGCUCCGcUAGU-----UAuuCG- -5'
33075 5' -47.8 NC_007497.1 + 44661 0.67 0.946507
Target:  5'- aUGCUGUCGCGGGGCuGUagccugccgCGAUGGccGCg -3'
miRNA:   3'- gGCGAUAGUGCUCCGcUA---------GUUAUU--CG- -5'
33075 5' -47.8 NC_007497.1 + 34906 0.68 0.941382
Target:  5'- aCCGCggcCGCGcaGGGCGAgcUCGAgcguccgAGGCg -3'
miRNA:   3'- -GGCGauaGUGC--UCCGCU--AGUUa------UUCG- -5'
33075 5' -47.8 NC_007497.1 + 33519 0.68 0.941382
Target:  5'- gCCGCgcagGUCGCGcguaucGGCG-UCAAUGcGCc -3'
miRNA:   3'- -GGCGa---UAGUGCu-----CCGCuAGUUAUuCG- -5'
33075 5' -47.8 NC_007497.1 + 41492 0.68 0.924151
Target:  5'- gCCGCUuucuUCuCGaAGGCGcUCGGUGccGGCg -3'
miRNA:   3'- -GGCGAu---AGuGC-UCCGCuAGUUAU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.