miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33076 3' -54.8 NC_007497.1 + 26940 0.66 0.735374
Target:  5'- cCGCg--CCGAGAccGGAUCGGcAUCGaaGCg -3'
miRNA:   3'- -GCGucaGGCUCUu-CCUAGCC-UAGC--CG- -5'
33076 3' -54.8 NC_007497.1 + 25490 0.66 0.728999
Target:  5'- gGUGGUUCGAGAucaacgcugcggacGGAagCGGAaaUCGGCu -3'
miRNA:   3'- gCGUCAGGCUCUu-------------CCUa-GCCU--AGCCG- -5'
33076 3' -54.8 NC_007497.1 + 43132 0.66 0.685724
Target:  5'- gCGCuucacgauUUCGAGAaggcggGGGAucugacgaucgucucUCGGAUCGGCg -3'
miRNA:   3'- -GCGuc------AGGCUCU------UCCU---------------AGCCUAGCCG- -5'
33076 3' -54.8 NC_007497.1 + 3523 0.67 0.670344
Target:  5'- gGCGG-CCGcgguGAGGGA-CGGuggCGGCu -3'
miRNA:   3'- gCGUCaGGCu---CUUCCUaGCCua-GCCG- -5'
33076 3' -54.8 NC_007497.1 + 30469 0.67 0.659312
Target:  5'- cCGCAauguguGUCgCGcuGGAGGAUCuGGUCGGUg -3'
miRNA:   3'- -GCGU------CAG-GCu-CUUCCUAGcCUAGCCG- -5'
33076 3' -54.8 NC_007497.1 + 17620 0.68 0.615036
Target:  5'- gCGCGGcUCCGGcu-GGccCGGAUUGGCu -3'
miRNA:   3'- -GCGUC-AGGCUcuuCCuaGCCUAGCCG- -5'
33076 3' -54.8 NC_007497.1 + 31466 0.68 0.59405
Target:  5'- aCGCAuucaCCGGGAcagaggacgcgagcGGGAUcguaaucgacuuuccCGGAUCGGCa -3'
miRNA:   3'- -GCGUca--GGCUCU--------------UCCUA---------------GCCUAGCCG- -5'
33076 3' -54.8 NC_007497.1 + 15525 0.69 0.553574
Target:  5'- gCGCAGgagcgCUGAcauggccuuucugaaGAucuGGAUCGGcgCGGCa -3'
miRNA:   3'- -GCGUCa----GGCU---------------CUu--CCUAGCCuaGCCG- -5'
33076 3' -54.8 NC_007497.1 + 36476 0.69 0.527755
Target:  5'- cCGCAGcgccagugucauUUCGAGucGGAggUCGGGguuUCGGCg -3'
miRNA:   3'- -GCGUC------------AGGCUCuuCCU--AGCCU---AGCCG- -5'
33076 3' -54.8 NC_007497.1 + 35214 0.69 0.515013
Target:  5'- uGguGUCUcuuGAGAAGGcgCGGAgcgaucgcgaugCGGCu -3'
miRNA:   3'- gCguCAGG---CUCUUCCuaGCCUa-----------GCCG- -5'
33076 3' -54.8 NC_007497.1 + 1844 0.69 0.506587
Target:  5'- uCGCGGUCguCGAGguGGAUgcguucauccCGGAaCGGCa -3'
miRNA:   3'- -GCGUCAG--GCUCuuCCUA----------GCCUaGCCG- -5'
33076 3' -54.8 NC_007497.1 + 4162 0.71 0.435696
Target:  5'- gCGCGGgCCG-GAAGGAaCGGGaaGGCg -3'
miRNA:   3'- -GCGUCaGGCuCUUCCUaGCCUagCCG- -5'
33076 3' -54.8 NC_007497.1 + 23925 0.74 0.297719
Target:  5'- uGCAGgCCGuGAugaucccGAUCGGGUCGGCc -3'
miRNA:   3'- gCGUCaGGCuCUuc-----CUAGCCUAGCCG- -5'
33076 3' -54.8 NC_007497.1 + 33360 1.12 0.000597
Target:  5'- aCGCAGUCCGAGAAGGAUCGGAUCGGCu -3'
miRNA:   3'- -GCGUCAGGCUCUUCCUAGCCUAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.