miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33076 5' -57.7 NC_007497.1 + 33106 0.66 0.509906
Target:  5'- aGAGCUGGCCGcgCUGucgaugggcgacaacGCGcGCG-AGCu -3'
miRNA:   3'- -UUCGACUGGCuaGAC---------------CGC-CGCuUCGc -5'
33076 5' -57.7 NC_007497.1 + 12109 0.66 0.505685
Target:  5'- cGAGC-GACCGaAUC--GUGGUGGAGCGa -3'
miRNA:   3'- -UUCGaCUGGC-UAGacCGCCGCUUCGC- -5'
33076 5' -57.7 NC_007497.1 + 15534 0.66 0.478638
Target:  5'- -cGCUGACauggccuuucugaaGAUCUGGauCGGCGcGGCa -3'
miRNA:   3'- uuCGACUGg-------------CUAGACC--GCCGCuUCGc -5'
33076 5' -57.7 NC_007497.1 + 4968 0.66 0.464371
Target:  5'- -cGCUGGCCGGUgcGGCcgucGGCgGAGGCa -3'
miRNA:   3'- uuCGACUGGCUAgaCCG----CCG-CUUCGc -5'
33076 5' -57.7 NC_007497.1 + 37922 0.66 0.464371
Target:  5'- cGGGC-GAUCGAUCaGGUGGUcgGAGGUGg -3'
miRNA:   3'- -UUCGaCUGGCUAGaCCGCCG--CUUCGC- -5'
33076 5' -57.7 NC_007497.1 + 5057 0.67 0.444383
Target:  5'- -cGCUGACCa--CUGGCGaGCGcAGCc -3'
miRNA:   3'- uuCGACUGGcuaGACCGC-CGCuUCGc -5'
33076 5' -57.7 NC_007497.1 + 5876 0.67 0.434572
Target:  5'- gAAGCUG-CCGggCggacucgcggagUGGuUGGCGAGGCGu -3'
miRNA:   3'- -UUCGACuGGCuaG------------ACC-GCCGCUUCGC- -5'
33076 5' -57.7 NC_007497.1 + 23015 0.67 0.405911
Target:  5'- --cCUGGCCGcaugCgggGGCGGCGAcgacAGCGg -3'
miRNA:   3'- uucGACUGGCua--Ga--CCGCCGCU----UCGC- -5'
33076 5' -57.7 NC_007497.1 + 35042 0.67 0.405911
Target:  5'- gAAGCUGGCCGAg--GcGCGaGCGAuugaAGCa -3'
miRNA:   3'- -UUCGACUGGCUagaC-CGC-CGCU----UCGc -5'
33076 5' -57.7 NC_007497.1 + 2973 0.68 0.369601
Target:  5'- gGAGgaGGCCGAUCUccGGCGcGUGuggacGGCGa -3'
miRNA:   3'- -UUCgaCUGGCUAGA--CCGC-CGCu----UCGC- -5'
33076 5' -57.7 NC_007497.1 + 35225 0.68 0.358289
Target:  5'- -cGCUG-CCGcgCUGGUGucucuugagaaggcGCGGAGCGa -3'
miRNA:   3'- uuCGACuGGCuaGACCGC--------------CGCUUCGC- -5'
33076 5' -57.7 NC_007497.1 + 36534 0.69 0.327437
Target:  5'- cGGCUuccucCCGGUCU-GCGGCGAGGCc -3'
miRNA:   3'- uUCGAcu---GGCUAGAcCGCCGCUUCGc -5'
33076 5' -57.7 NC_007497.1 + 32981 0.72 0.194794
Target:  5'- uGGGCUcGCCGGaauaUCUGGCGGaaauGGAGCGg -3'
miRNA:   3'- -UUCGAcUGGCU----AGACCGCCg---CUUCGC- -5'
33076 5' -57.7 NC_007497.1 + 18762 0.72 0.194794
Target:  5'- cAAGaUGAaaGcgCUGGCGGCGAAGCu -3'
miRNA:   3'- -UUCgACUggCuaGACCGCCGCUUCGc -5'
33076 5' -57.7 NC_007497.1 + 33325 1.06 0.000672
Target:  5'- gAAGCUGACCGAUCUGGCGGCGAAGCGc -3'
miRNA:   3'- -UUCGACUGGCUAGACCGCCGCUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.