miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33077 3' -57.3 NC_007497.1 + 35705 0.66 0.495229
Target:  5'- cGCCGGaCAGCgcCAcCGCCU-UGCUGa- -3'
miRNA:   3'- aUGGCC-GUCGa-GU-GCGGAaACGACgu -5'
33077 3' -57.3 NC_007497.1 + 23568 0.66 0.484681
Target:  5'- gGCgCGGCGGCggGCGCCg--GCgucgUGCAc -3'
miRNA:   3'- aUG-GCCGUCGagUGCGGaaaCG----ACGU- -5'
33077 3' -57.3 NC_007497.1 + 23395 0.67 0.433671
Target:  5'- aGCCGcGCucGCggAUGCUUUUGCUGCu -3'
miRNA:   3'- aUGGC-CGu-CGagUGCGGAAACGACGu -5'
33077 3' -57.3 NC_007497.1 + 32510 0.68 0.367815
Target:  5'- gACCGGCGGC-CACGUCacgggGCcggGCAc -3'
miRNA:   3'- aUGGCCGUCGaGUGCGGaaa--CGa--CGU- -5'
33077 3' -57.3 NC_007497.1 + 23685 0.68 0.350303
Target:  5'- gGCCGGCGGC-CGCGU----GCUGCc -3'
miRNA:   3'- aUGGCCGUCGaGUGCGgaaaCGACGu -5'
33077 3' -57.3 NC_007497.1 + 41590 0.69 0.322725
Target:  5'- aAgCGGCGGCUCGUGCCUUccugccggaaaagaUGCUGgGu -3'
miRNA:   3'- aUgGCCGUCGAGUGCGGAA--------------ACGACgU- -5'
33077 3' -57.3 NC_007497.1 + 34054 0.7 0.284824
Target:  5'- cGCUGGCAGCgauggACGCCgcagcacggggUGCUGCu -3'
miRNA:   3'- aUGGCCGUCGag---UGCGGaa---------ACGACGu -5'
33077 3' -57.3 NC_007497.1 + 23945 0.7 0.271811
Target:  5'- cGCCGGcCAGCgcuUCACGCCggaugagUGCcGCGc -3'
miRNA:   3'- aUGGCC-GUCG---AGUGCGGaa-----ACGaCGU- -5'
33077 3' -57.3 NC_007497.1 + 21105 0.71 0.244609
Target:  5'- -uCCGGCGGC-CGCGCUcgcucaucgUcUGCUGCAg -3'
miRNA:   3'- auGGCCGUCGaGUGCGG---------AaACGACGU- -5'
33077 3' -57.3 NC_007497.1 + 44537 0.71 0.244609
Target:  5'- -uCCGGCuucugGGCUgGCGCCg--GCUGCu -3'
miRNA:   3'- auGGCCG-----UCGAgUGCGGaaaCGACGu -5'
33077 3' -57.3 NC_007497.1 + 35068 0.71 0.238172
Target:  5'- aUGCCGGCaAGCUCG-GCCUgcGCcGCGa -3'
miRNA:   3'- -AUGGCCG-UCGAGUgCGGAaaCGaCGU- -5'
33077 3' -57.3 NC_007497.1 + 4686 0.71 0.225723
Target:  5'- -uCCGGuCAGUUCAUGCCgaUGcCUGCGg -3'
miRNA:   3'- auGGCC-GUCGAGUGCGGaaAC-GACGU- -5'
33077 3' -57.3 NC_007497.1 + 33788 0.73 0.162181
Target:  5'- -cCCGGCcuGC-CGCGCCUcgGCUGCGu -3'
miRNA:   3'- auGGCCGu-CGaGUGCGGAaaCGACGU- -5'
33077 3' -57.3 NC_007497.1 + 43608 0.74 0.153301
Target:  5'- gGCCGGCGGCUCGuCGCUUUgcGUUGUc -3'
miRNA:   3'- aUGGCCGUCGAGU-GCGGAAa-CGACGu -5'
33077 3' -57.3 NC_007497.1 + 35336 0.75 0.115204
Target:  5'- aGCCgGGCGGCucgUCACGUaUUUGCUGCAa -3'
miRNA:   3'- aUGG-CCGUCG---AGUGCGgAAACGACGU- -5'
33077 3' -57.3 NC_007497.1 + 34434 1.07 0.000471
Target:  5'- aUACCGGCAGCUCACGCCUUUGCUGCAg -3'
miRNA:   3'- -AUGGCCGUCGAGUGCGGAAACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.