miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33077 5' -59.2 NC_007497.1 + 13918 0.66 0.422986
Target:  5'- cGUGcGGCccaugcGGCGCccccuGCGGCGGCc- -3'
miRNA:   3'- uCACuUCGu-----CCGCGuu---CGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 16307 0.66 0.413557
Target:  5'- uAGUgGAAGUgaGGGCGCccgcgaacgAAGCacacagccucGGCGGCGGc -3'
miRNA:   3'- -UCA-CUUCG--UCCGCG---------UUCG----------CCGCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 22098 0.66 0.413557
Target:  5'- --gGAAGCAGGCGCcgaaAAGCGcucgaUGGUGGg -3'
miRNA:   3'- ucaCUUCGUCCGCG----UUCGCc----GCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 39286 0.66 0.413557
Target:  5'- --cGAAGC--GCGUcGGCGGCGGCc- -3'
miRNA:   3'- ucaCUUCGucCGCGuUCGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 3529 0.66 0.404258
Target:  5'- cGUGAAgGCGGcCGCGgugagggacGGUGGCGGCu- -3'
miRNA:   3'- uCACUU-CGUCcGCGU---------UCGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 27186 0.67 0.368417
Target:  5'- aGGcGggGC-GGCGCAu-CGGCGGCc- -3'
miRNA:   3'- -UCaCuuCGuCCGCGUucGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 2975 0.68 0.334817
Target:  5'- cAGgagGAGGCcgaucuccGGCGCGuGUGGaCGGCGAc -3'
miRNA:   3'- -UCa--CUUCGu-------CCGCGUuCGCC-GCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 41599 0.68 0.334817
Target:  5'- -----cGUGGGaGCAAGCGGCGGCu- -3'
miRNA:   3'- ucacuuCGUCCgCGUUCGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 32312 0.68 0.334817
Target:  5'- uGGUGcuGGCGGGCaGUu--CGGUGGCGAu -3'
miRNA:   3'- -UCACu-UCGUCCG-CGuucGCCGCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 34658 0.68 0.334817
Target:  5'- cGUGccGCGGucGCGCAAaCGGCGGCc- -3'
miRNA:   3'- uCACuuCGUC--CGCGUUcGCCGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 43079 0.68 0.325979
Target:  5'- cGUGAAGCGccGGCGCAAucucuuuGCGGCGcuccaGCa- -3'
miRNA:   3'- uCACUUCGU--CCGCGUU-------CGCCGC-----CGcu -5'
33077 5' -59.2 NC_007497.1 + 7921 0.68 0.311123
Target:  5'- --aGAAGCGGGUauuuGCAucGGUGGCGuGUGAu -3'
miRNA:   3'- ucaCUUCGUCCG----CGU--UCGCCGC-CGCU- -5'
33077 5' -59.2 NC_007497.1 + 4267 0.68 0.303513
Target:  5'- cGUGc-GCAuGGCGCcGGaauuGGCGGCGAa -3'
miRNA:   3'- uCACuuCGU-CCGCGuUCg---CCGCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 33412 0.68 0.303513
Target:  5'- --cGAgcAGCGGaucGCGCAgcugcgcgucgaGGCGGUGGCGAc -3'
miRNA:   3'- ucaCU--UCGUC---CGCGU------------UCGCCGCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 29924 0.68 0.30276
Target:  5'- gAGUGcuGCGGGCucaucguGCGgacAGCGGCgGGUGAg -3'
miRNA:   3'- -UCACuuCGUCCG-------CGU---UCGCCG-CCGCU- -5'
33077 5' -59.2 NC_007497.1 + 32744 0.69 0.288726
Target:  5'- uGGUGAAcGCuuccucGGCGCGcccAGCGGCguucucGGCGGa -3'
miRNA:   3'- -UCACUU-CGu-----CCGCGU---UCGCCG------CCGCU- -5'
33077 5' -59.2 NC_007497.1 + 14282 0.69 0.286557
Target:  5'- cGUGGcAGCuGGCGCAugcacugcgucgccAGCGaGCGGCc- -3'
miRNA:   3'- uCACU-UCGuCCGCGU--------------UCGC-CGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 27621 0.69 0.281546
Target:  5'- aGGUGuuGCAGGacauCGCGAGCGuguuccGCGGCa- -3'
miRNA:   3'- -UCACuuCGUCC----GCGUUCGC------CGCCGcu -5'
33077 5' -59.2 NC_007497.1 + 40151 0.69 0.274509
Target:  5'- --gGAAGCauucaAGGCGCAcgugaAGC-GCGGCGAc -3'
miRNA:   3'- ucaCUUCG-----UCCGCGU-----UCGcCGCCGCU- -5'
33077 5' -59.2 NC_007497.1 + 10812 0.69 0.254245
Target:  5'- -aUGucGUAGGCagagGC-AGCGGUGGCGAa -3'
miRNA:   3'- ucACuuCGUCCG----CGuUCGCCGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.