Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33078 | 3' | -53.7 | NC_007497.1 | + | 42402 | 0.7 | 0.522465 |
Target: 5'- uGGCGGUGCUgCGCUGcguGACCc----- -3' miRNA: 3'- gCCGCCGCGA-GCGACu--UUGGcuuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 33381 | 0.7 | 0.51169 |
Target: 5'- gCGGUGGCGaccgacaaGCUGAcgcaguCCGAGAAGg -3' miRNA: 3'- -GCCGCCGCgag-----CGACUuu----GGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 4624 | 0.71 | 0.469585 |
Target: 5'- -cGCGGCGCUCGUUGcauGGgCGAAGGu -3' miRNA: 3'- gcCGCCGCGAGCGACu--UUgGCUUUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 44547 | 0.71 | 0.459335 |
Target: 5'- gGGCuGGCGCcggcUGCUGAGACUGAu--- -3' miRNA: 3'- gCCG-CCGCGa---GCGACUUUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 3805 | 0.71 | 0.449205 |
Target: 5'- cCGGCGGCGCaucgaucccaUCGCUGAugUCGucAAa -3' miRNA: 3'- -GCCGCCGCG----------AGCGACUuuGGCuuUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 39277 | 0.74 | 0.290715 |
Target: 5'- uCGGCGGCgGCcUGCUGAAuCCGGAGc- -3' miRNA: 3'- -GCCGCCG-CGaGCGACUUuGGCUUUuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 33460 | 0.77 | 0.200402 |
Target: 5'- gGGCGGCGCcCGUUccGAGCCGGAAAGc -3' miRNA: 3'- gCCGCCGCGaGCGAc-UUUGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 38185 | 0.77 | 0.194986 |
Target: 5'- aGGCGcGCGCUCGCgc--ACCGAAAAa -3' miRNA: 3'- gCCGC-CGCGAGCGacuuUGGCUUUUc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 5126 | 0.79 | 0.139417 |
Target: 5'- gGGCgaaugGGCGCUCGCUGAgcAACCGAc--- -3' miRNA: 3'- gCCG-----CCGCGAGCGACU--UUGGCUuuuc -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 36610 | 0.8 | 0.124378 |
Target: 5'- uCGGCGGC-CUCGCcGcAGACCGGGAGGa -3' miRNA: 3'- -GCCGCCGcGAGCGaC-UUUGGCUUUUC- -5' |
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33078 | 3' | -53.7 | NC_007497.1 | + | 34790 | 1.1 | 0.000984 |
Target: 5'- gCGGCGGCGCUCGCUGAAACCGAAAAGg -3' miRNA: 3'- -GCCGCCGCGAGCGACUUUGGCUUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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