miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33078 5' -57.3 NC_007497.1 + 35040 0.68 0.442606
Target:  5'- aGCUgGCCGAgGCGCGAgcgauugaagcaAGU-GCGGUCGc -3'
miRNA:   3'- cCGG-CGGCU-CGCGCU------------UCAuCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 12015 0.68 0.442606
Target:  5'- uGCCG-CGAGCgGCGAaaccGGUAccGUGAUCGg -3'
miRNA:   3'- cCGGCgGCUCG-CGCU----UCAU--CGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 26043 0.68 0.432993
Target:  5'- cGUCGCCG-GCcauCGGAGgcGUGAUCGa -3'
miRNA:   3'- cCGGCGGCuCGc--GCUUCauCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 36557 0.69 0.414139
Target:  5'- aGGCCGCCGAGCuCGAucgccuucGUGaccaccCGAUCGu -3'
miRNA:   3'- -CCGGCGGCUCGcGCUu-------CAUc-----GCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 36443 0.69 0.414139
Target:  5'- aGUCGCCGAucaGCGAGG-AGCGGUaCGa -3'
miRNA:   3'- cCGGCGGCUcg-CGCUUCaUCGCUA-GC- -5'
33078 5' -57.3 NC_007497.1 + 9692 0.69 0.395798
Target:  5'- cGGCgCGCCGGGUGUGAAGcauCGAUa- -3'
miRNA:   3'- -CCG-GCGGCUCGCGCUUCaucGCUAgc -5'
33078 5' -57.3 NC_007497.1 + 23245 0.69 0.386826
Target:  5'- cGGCCGCguugaCGAGCGCGcgggaGAGcUGGCGGa-- -3'
miRNA:   3'- -CCGGCG-----GCUCGCGC-----UUC-AUCGCUagc -5'
33078 5' -57.3 NC_007497.1 + 11297 0.69 0.375365
Target:  5'- uGGCC-CCGAcCGCGAccGGUuuacuugcacuguuGGCGGUCGa -3'
miRNA:   3'- -CCGGcGGCUcGCGCU--UCA--------------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 15262 0.7 0.360727
Target:  5'- cGCCgGCCGAGCGCcgcGAGgcGCGcAUCc -3'
miRNA:   3'- cCGG-CGGCUCGCGc--UUCauCGC-UAGc -5'
33078 5' -57.3 NC_007497.1 + 212 0.7 0.352305
Target:  5'- cGCCGCgGuGCGCGAcgauGUGAUCGc -3'
miRNA:   3'- cCGGCGgCuCGCGCUucauCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 42889 0.7 0.352305
Target:  5'- cGCCGCaucgcggcGGCGuCGggGcAGCGAUCGa -3'
miRNA:   3'- cCGGCGgc------UCGC-GCuuCaUCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 33967 0.7 0.335881
Target:  5'- uGGCCGCCGaAGCGUGGaacaAGUA-CG-UCGa -3'
miRNA:   3'- -CCGGCGGC-UCGCGCU----UCAUcGCuAGC- -5'
33078 5' -57.3 NC_007497.1 + 27118 0.71 0.315377
Target:  5'- cGGCCGCCGAuGCGCcgccccgccuugcgcGGAucggcaaUAGCGAUCa -3'
miRNA:   3'- -CCGGCGGCU-CGCG---------------CUUc------AUCGCUAGc -5'
33078 5' -57.3 NC_007497.1 + 28121 0.71 0.304733
Target:  5'- aGCUGCCGAGUGCGAaauccggcuGGcUGGUGcgCGu -3'
miRNA:   3'- cCGGCGGCUCGCGCU---------UC-AUCGCuaGC- -5'
33078 5' -57.3 NC_007497.1 + 5874 0.71 0.297301
Target:  5'- aGCUGCCGGGCggacucGCGGAGUgguuGGCGAggCGu -3'
miRNA:   3'- cCGGCGGCUCG------CGCUUCA----UCGCUa-GC- -5'
33078 5' -57.3 NC_007497.1 + 15542 0.71 0.297301
Target:  5'- uGGCCuuuCUGAagaucuggaucgGCGCGGcAGUGGCGAUCGc -3'
miRNA:   3'- -CCGGc--GGCU------------CGCGCU-UCAUCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 32090 0.71 0.289289
Target:  5'- uGGUCGCCGAcCGuCGAgggguucGGUGGCGAUaCGa -3'
miRNA:   3'- -CCGGCGGCUcGC-GCU-------UCAUCGCUA-GC- -5'
33078 5' -57.3 NC_007497.1 + 34587 0.71 0.288569
Target:  5'- cGGCCGCCGuuuGCGCGAccgcggcacgcuccGUugcugcggccaagccGGCGGUCGc -3'
miRNA:   3'- -CCGGCGGCu--CGCGCUu-------------CA---------------UCGCUAGC- -5'
33078 5' -57.3 NC_007497.1 + 11738 0.71 0.282861
Target:  5'- cGGCCguGCCGGuuccgggccGCGCGAGGUuGCGA-CGa -3'
miRNA:   3'- -CCGG--CGGCU---------CGCGCUUCAuCGCUaGC- -5'
33078 5' -57.3 NC_007497.1 + 11689 0.72 0.275158
Target:  5'- cGGCCgggaguaGCCGGGCGCGcGAGUgaAGC-AUCGa -3'
miRNA:   3'- -CCGG-------CGGCUCGCGC-UUCA--UCGcUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.