miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33079 5' -54.2 NC_007497.1 + 22259 0.66 0.761713
Target:  5'- uGCUcGGUC-AGAgGAUCAGCAAuGCu- -3'
miRNA:   3'- -CGA-CCAGcUCUgCUAGUCGUUcCGcc -5'
33079 5' -54.2 NC_007497.1 + 40107 0.66 0.75129
Target:  5'- cGCUGaacaaGGGCGAggaCAGCgAAGGCGGa -3'
miRNA:   3'- -CGACcagc-UCUGCUa--GUCG-UUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 23283 0.66 0.740743
Target:  5'- aGCUGGUCGAcACGcugCuGCAGGcugccaGCGGc -3'
miRNA:   3'- -CGACCAGCUcUGCua-GuCGUUC------CGCC- -5'
33079 5' -54.2 NC_007497.1 + 4968 0.66 0.740743
Target:  5'- cGCUGGcCGGuGCGGccgUCGGCGgAGGCa- -3'
miRNA:   3'- -CGACCaGCUcUGCU---AGUCGU-UCCGcc -5'
33079 5' -54.2 NC_007497.1 + 33800 0.66 0.73862
Target:  5'- cGCUGGaaaAGGCGAUCcaggacaaggauGCgAAGGCGGa -3'
miRNA:   3'- -CGACCagcUCUGCUAGu-----------CG-UUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 32315 0.67 0.664429
Target:  5'- uGCUGGUgcuGGCGggCAGUucGGUGGc -3'
miRNA:   3'- -CGACCAgcuCUGCuaGUCGuuCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 42038 0.68 0.646631
Target:  5'- --cGGUCGgcgucguguagucguAGACGAUCuGCcacguugacguGAGGCGGc -3'
miRNA:   3'- cgaCCAGC---------------UCUGCUAGuCG-----------UUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 35444 0.68 0.631028
Target:  5'- cGUUGGUCGAG-CGAacgaAGCGAccGGCGc -3'
miRNA:   3'- -CGACCAGCUCuGCUag--UCGUU--CCGCc -5'
33079 5' -54.2 NC_007497.1 + 4276 0.68 0.631028
Target:  5'- -gUGcGUCGc--CGAUCAGCAcGGGCGGc -3'
miRNA:   3'- cgAC-CAGCucuGCUAGUCGU-UCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 37377 0.69 0.586551
Target:  5'- --cGG-CaAGACGAUUcaauGGCAGGGCGGu -3'
miRNA:   3'- cgaCCaGcUCUGCUAG----UCGUUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 6982 0.69 0.553569
Target:  5'- cCUGGgCGAccGgGAUCGGCAGGGCGa -3'
miRNA:   3'- cGACCaGCUc-UgCUAGUCGUUCCGCc -5'
33079 5' -54.2 NC_007497.1 + 24995 0.7 0.52116
Target:  5'- -aUGGUgcaGGcGAUGGUCGGCcAGGCGGu -3'
miRNA:   3'- cgACCAg--CU-CUGCUAGUCGuUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 36634 0.71 0.468928
Target:  5'- gGgUGGUCacgaAGGCGAUCgAGCucGGCGGc -3'
miRNA:   3'- -CgACCAGc---UCUGCUAG-UCGuuCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 32184 0.72 0.409066
Target:  5'- aGCUGGUgcagGGGuuGAUCgcaaccgaaagccGGCAGGGCGGg -3'
miRNA:   3'- -CGACCAg---CUCugCUAG-------------UCGUUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 28630 0.72 0.37338
Target:  5'- gGCaaagGGUgGAGGCGG-CGGCGGcGGCGGu -3'
miRNA:   3'- -CGa---CCAgCUCUGCUaGUCGUU-CCGCC- -5'
33079 5' -54.2 NC_007497.1 + 35040 0.75 0.277416
Target:  5'- aGCUGGcCGAGgcgcgaGCGAUUgaAGCAAGuGCGGu -3'
miRNA:   3'- -CGACCaGCUC------UGCUAG--UCGUUC-CGCC- -5'
33079 5' -54.2 NC_007497.1 + 27231 0.75 0.259407
Target:  5'- uGCUGGUCGguccggggcAGGUGAUCGcuauugccgauccgcGCAAGGCGGg -3'
miRNA:   3'- -CGACCAGC---------UCUGCUAGU---------------CGUUCCGCC- -5'
33079 5' -54.2 NC_007497.1 + 35790 1.13 0.000632
Target:  5'- cGCUGGUCGAGACGAUCAGCAAGGCGGu -3'
miRNA:   3'- -CGACCAGCUCUGCUAGUCGUUCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.