miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33080 5' -52 NC_007497.1 + 44329 0.66 0.808304
Target:  5'- cGCCGGAGcAAAccGGCUUgCCGCCu--- -3'
miRNA:   3'- uCGGCCUU-UUU--UCGGAaGGCGGcuuu -5'
33080 5' -52 NC_007497.1 + 5081 0.66 0.808304
Target:  5'- cGuCCGGAAGGucGCCgagaagUUCGCUGAc- -3'
miRNA:   3'- uC-GGCCUUUUuuCGGa-----AGGCGGCUuu -5'
33080 5' -52 NC_007497.1 + 33978 0.66 0.808304
Target:  5'- cGCCGGc----GGCauggCCGCCGAAGc -3'
miRNA:   3'- uCGGCCuuuuuUCGgaa-GGCGGCUUU- -5'
33080 5' -52 NC_007497.1 + 23230 0.66 0.808304
Target:  5'- cGCCGGcuGccGGgCUUCCGgCGGAAg -3'
miRNA:   3'- uCGGCCuuUuuUCgGAAGGCgGCUUU- -5'
33080 5' -52 NC_007497.1 + 17144 0.66 0.798195
Target:  5'- cGGCCGGGAuc--GCCaucggUUCCGCCc--- -3'
miRNA:   3'- -UCGGCCUUuuuuCGG-----AAGGCGGcuuu -5'
33080 5' -52 NC_007497.1 + 34779 0.66 0.798195
Target:  5'- cGCUGaaaccGAAAAGGGUCUcgcggCCGCCGAGc -3'
miRNA:   3'- uCGGC-----CUUUUUUCGGAa----GGCGGCUUu -5'
33080 5' -52 NC_007497.1 + 8621 0.66 0.798195
Target:  5'- cGCuCGGuAAGAAGCCauucgcacgUCaCGCCGAAc -3'
miRNA:   3'- uCG-GCCuUUUUUCGGa--------AG-GCGGCUUu -5'
33080 5' -52 NC_007497.1 + 17095 0.66 0.787893
Target:  5'- cGGCCGGAugGAAGCUUgugcCUGUCGc-- -3'
miRNA:   3'- -UCGGCCUuuUUUCGGAa---GGCGGCuuu -5'
33080 5' -52 NC_007497.1 + 17562 0.66 0.787893
Target:  5'- cAGCCGGA-----GCCgcgCGCCGAGGu -3'
miRNA:   3'- -UCGGCCUuuuuuCGGaagGCGGCUUU- -5'
33080 5' -52 NC_007497.1 + 35615 0.66 0.777409
Target:  5'- gGGCCGGGGcacgucggagcuGAAGGCgCU--CGCCGAGGa -3'
miRNA:   3'- -UCGGCCUU------------UUUUCG-GAagGCGGCUUU- -5'
33080 5' -52 NC_007497.1 + 40575 0.66 0.766758
Target:  5'- cGCCGGAAAc--GCCa--CGCCGGGc -3'
miRNA:   3'- uCGGCCUUUuuuCGGaagGCGGCUUu -5'
33080 5' -52 NC_007497.1 + 27484 0.67 0.755953
Target:  5'- -aCCGGAucuGAcGGCaugUCCGCCGAu- -3'
miRNA:   3'- ucGGCCUu--UUuUCGga-AGGCGGCUuu -5'
33080 5' -52 NC_007497.1 + 11689 0.67 0.755953
Target:  5'- cGGCCGGGAGu-AGCCgggCGCgCGAGu -3'
miRNA:   3'- -UCGGCCUUUuuUCGGaagGCG-GCUUu -5'
33080 5' -52 NC_007497.1 + 30442 0.67 0.733932
Target:  5'- uGGUCGGugcGAAGGUgUUUCGCCGGc- -3'
miRNA:   3'- -UCGGCCuu-UUUUCGgAAGGCGGCUuu -5'
33080 5' -52 NC_007497.1 + 42577 0.67 0.733932
Target:  5'- cAGCCGGAGGcccAAGCUcgUCCGCaCGu-- -3'
miRNA:   3'- -UCGGCCUUUu--UUCGGa-AGGCG-GCuuu -5'
33080 5' -52 NC_007497.1 + 2600 0.67 0.733932
Target:  5'- uGCCGGAuAAccGCUUg-CGCCGAAc -3'
miRNA:   3'- uCGGCCUuUUuuCGGAagGCGGCUUu -5'
33080 5' -52 NC_007497.1 + 2910 0.67 0.733932
Target:  5'- cGCCGGAGAucGGCCUccUCCuGCUc--- -3'
miRNA:   3'- uCGGCCUUUuuUCGGA--AGG-CGGcuuu -5'
33080 5' -52 NC_007497.1 + 23945 0.67 0.733932
Target:  5'- cGCCGGcc---AGCgCUUCaCGCCGGAu -3'
miRNA:   3'- uCGGCCuuuuuUCG-GAAG-GCGGCUUu -5'
33080 5' -52 NC_007497.1 + 32858 0.68 0.677119
Target:  5'- gAGCCGGGcgcucGCuCUguaucaggagUCCGCCGAGAa -3'
miRNA:   3'- -UCGGCCUuuuuuCG-GA----------AGGCGGCUUU- -5'
33080 5' -52 NC_007497.1 + 15803 0.68 0.677119
Target:  5'- cGCCgguGGAGAAAAGCggggcgaaaCUUCCGCCccuGAAAa -3'
miRNA:   3'- uCGG---CCUUUUUUCG---------GAAGGCGG---CUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.