Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 30190 | 0.69 | 0.607493 |
|
Target: 5'- uGCgGGAAccu-GCUgUCCGCCGAAAu -3' miRNA: 3'- uCGgCCUUuuuuCGGaAGGCGGCUUU- -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 32501 | 0.7 | 0.561389 |
|
Target: 5'- cGGCCGcGAcgccauccGAcAGGCCgcccgccagUCCGCCGAGAa -3' miRNA: 3'- -UCGGC-CU--------UUuUUCGGa--------AGGCGGCUUU- -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 26709 | 0.7 | 0.549998 |
|
Target: 5'- cGCCGcGGAcAAGGCCguuacguaUCUGCCGGAAu -3' miRNA: 3'- uCGGC-CUUuUUUCGGa-------AGGCGGCUUU- -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 14962 | 0.71 | 0.505238 |
|
Target: 5'- cGGCCGGAAAAGGcGCCgga-GCCGGu- -3' miRNA: 3'- -UCGGCCUUUUUU-CGGaaggCGGCUuu -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 33444 | 0.73 | 0.411084 |
|
Target: 5'- gAGCCGGAAAGcAGGCg-UCUGCuCGAGAa -3' miRNA: 3'- -UCGGCCUUUU-UUCGgaAGGCG-GCUUU- -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 14513 | 0.75 | 0.312016 |
|
Target: 5'- uGGCCGGGAAu--GCCgggCCGCCGu-- -3' miRNA: 3'- -UCGGCCUUUuuuCGGaa-GGCGGCuuu -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 11577 | 0.76 | 0.266105 |
|
Target: 5'- cAGCaGGGuuAAAGAGCgUUCCGCCGAGg -3' miRNA: 3'- -UCGgCCU--UUUUUCGgAAGGCGGCUUu -5' |
|||||||
| 33080 | 5' | -52 | NC_007497.1 | + | 36583 | 1.06 | 0.002163 |
|
Target: 5'- aAGCCGGAAAAAAGCCUUCCGCCGAAAc -3' miRNA: 3'- -UCGGCCUUUUUUCGGAAGGCGGCUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home