miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33081 3' -50.1 NC_007497.1 + 32656 0.66 0.92011
Target:  5'- uUCGGUUggcucggCAAUGCGAUCGGacuuGGCg -3'
miRNA:   3'- cAGCUAGa------GUUAUGCUGGCCguu-CUG- -5'
33081 3' -50.1 NC_007497.1 + 9498 0.66 0.92011
Target:  5'- uUCGAUCUCgAGUACaaGCgGGCccuGGACu -3'
miRNA:   3'- cAGCUAGAG-UUAUGc-UGgCCGu--UCUG- -5'
33081 3' -50.1 NC_007497.1 + 26477 0.66 0.906766
Target:  5'- aUCG-UUUCcgcgcugACGGCCGGCAGcGACg -3'
miRNA:   3'- cAGCuAGAGuua----UGCUGGCCGUU-CUG- -5'
33081 3' -50.1 NC_007497.1 + 42379 0.66 0.89964
Target:  5'- -cUGAUCUCGGgaACGAUCGGCAu--- -3'
miRNA:   3'- caGCUAGAGUUa-UGCUGGCCGUucug -5'
33081 3' -50.1 NC_007497.1 + 4525 0.66 0.892216
Target:  5'- cGUCGAaauggguggCUgGGUGCuGAUCGGCGGGAa -3'
miRNA:   3'- -CAGCUa--------GAgUUAUG-CUGGCCGUUCUg -5'
33081 3' -50.1 NC_007497.1 + 35929 0.66 0.892216
Target:  5'- gGUCGAUUUU---GCGGUCGcGCAGGACg -3'
miRNA:   3'- -CAGCUAGAGuuaUGCUGGC-CGUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 22055 0.67 0.884499
Target:  5'- aGUCGAUCUCAggugcguucAUAUGGCCuccgucGCGGuGACg -3'
miRNA:   3'- -CAGCUAGAGU---------UAUGCUGGc-----CGUU-CUG- -5'
33081 3' -50.1 NC_007497.1 + 35190 0.67 0.884499
Target:  5'- -gCGAUCgCGAUGCGGCugCGGCGAaACu -3'
miRNA:   3'- caGCUAGaGUUAUGCUG--GCCGUUcUG- -5'
33081 3' -50.1 NC_007497.1 + 16239 0.67 0.884499
Target:  5'- cGUCGccGUCUCGGUGCGuGCCGGgAucaGCg -3'
miRNA:   3'- -CAGC--UAGAGUUAUGC-UGGCCgUuc-UG- -5'
33081 3' -50.1 NC_007497.1 + 36286 0.67 0.859653
Target:  5'- cGUCGGUCUCAugagcuUGGCaaaguaGGCGGGAa -3'
miRNA:   3'- -CAGCUAGAGUuau---GCUGg-----CCGUUCUg -5'
33081 3' -50.1 NC_007497.1 + 30601 0.67 0.859653
Target:  5'- aGUCGAcgUCGAU-CGugUGGCAGGGu -3'
miRNA:   3'- -CAGCUagAGUUAuGCugGCCGUUCUg -5'
33081 3' -50.1 NC_007497.1 + 39812 0.67 0.859653
Target:  5'- aUCGAUCUCGAgucguggcucGCGACCGaaguGCA-GACc -3'
miRNA:   3'- cAGCUAGAGUUa---------UGCUGGC----CGUuCUG- -5'
33081 3' -50.1 NC_007497.1 + 26120 0.68 0.832435
Target:  5'- aUCGA-CUCGAUcacgccuccgAUGGCCGGCGAcGCg -3'
miRNA:   3'- cAGCUaGAGUUA----------UGCUGGCCGUUcUG- -5'
33081 3' -50.1 NC_007497.1 + 30603 0.68 0.82288
Target:  5'- aGUCGAccucaaauagCUCGAUACgguGACCGGgcuCGAGACu -3'
miRNA:   3'- -CAGCUa---------GAGUUAUG---CUGGCC---GUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 34696 0.69 0.792927
Target:  5'- uUCGcgCUCG--GCGGCCG-CGAGACc -3'
miRNA:   3'- cAGCuaGAGUuaUGCUGGCcGUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 6993 0.69 0.761299
Target:  5'- cUCGAUgUCGcccuggGCGACCgggaucGGCAGGGCg -3'
miRNA:   3'- cAGCUAgAGUua----UGCUGG------CCGUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 32172 0.69 0.750444
Target:  5'- gGUUGAUCgCAAc-CGaaaGCCGGCAGGGCg -3'
miRNA:   3'- -CAGCUAGaGUUauGC---UGGCCGUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 34921 0.69 0.750444
Target:  5'- -gUGAUCgcgcgCGAgaccGCGGCCGcGCAGGGCg -3'
miRNA:   3'- caGCUAGa----GUUa---UGCUGGC-CGUUCUG- -5'
33081 3' -50.1 NC_007497.1 + 23119 0.7 0.739456
Target:  5'- aGUCGcgCUCGcacUGCuGGCCGGCGaugcGGGCa -3'
miRNA:   3'- -CAGCuaGAGUu--AUG-CUGGCCGU----UCUG- -5'
33081 3' -50.1 NC_007497.1 + 15986 0.71 0.65992
Target:  5'- uUCGAUCUCGAUccguGCGcgccgauaaACCGGCcuuGGGCu -3'
miRNA:   3'- cAGCUAGAGUUA----UGC---------UGGCCGu--UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.