Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 43493 | 0.67 | 0.540785 |
|
Target: 5'- -cGGGCGGUCGGUCaGUgCCGAa----- -3' miRNA: 3'- guCCCGCCAGUCAG-CA-GGCUcuagcu -5' |
|||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 34895 | 0.67 | 0.540785 |
|
Target: 5'- gCAGGGCGaGcUCgAG-CGUCCGAGGcgUCGc -3' miRNA: 3'- -GUCCCGC-C-AG-UCaGCAGGCUCU--AGCu -5' |
|||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 16431 | 0.67 | 0.496854 |
|
Target: 5'- --aGGUGGUCAGacuuggacgacgUGUCCGAGGUUGGc -3' miRNA: 3'- gucCCGCCAGUCa-----------GCAGGCUCUAGCU- -5' |
|||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 30309 | 0.69 | 0.429442 |
|
Target: 5'- uCGGGuccGCGGUCGGauuccCGUCCGGGAaauucaccgcgUCGAg -3' miRNA: 3'- -GUCC---CGCCAGUCa----GCAGGCUCU-----------AGCU- -5' |
|||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 25621 | 0.73 | 0.228197 |
|
Target: 5'- gCAGGGCGGUCAGgucuucauUCGUCaggcguuGAUCGGc -3' miRNA: 3'- -GUCCCGCCAGUC--------AGCAGgcu----CUAGCU- -5' |
|||||||
| 33081 | 5' | -57.1 | NC_007497.1 | + | 37359 | 1.08 | 0.000698 |
|
Target: 5'- gCAGGGCGGUCAGUCGUCCGAGAUCGAc -3' miRNA: 3'- -GUCCCGCCAGUCAGCAGGCUCUAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home