miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33082 3' -49.8 NC_007497.1 + 36034 0.66 0.939648
Target:  5'- --aUACGCGGAAGCc-GCGgCCGcGGCg -3'
miRNA:   3'- cagAUGCGCUUUUGcaUGU-GGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 39333 0.66 0.934189
Target:  5'- -gCUGCGCGAuc-CGUACAC---GGCg -3'
miRNA:   3'- caGAUGCGCUuuuGCAUGUGgcuCCG- -5'
33082 3' -49.8 NC_007497.1 + 25339 0.66 0.934189
Target:  5'- cGUCUGCuccucgauGCGAAAucGCGUGCA---GGGCg -3'
miRNA:   3'- -CAGAUG--------CGCUUU--UGCAUGUggcUCCG- -5'
33082 3' -49.8 NC_007497.1 + 5691 0.66 0.928428
Target:  5'- gGUCcgUACGCGcuGACGcugauCGuuGAGGCu -3'
miRNA:   3'- -CAG--AUGCGCuuUUGCau---GUggCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 2640 0.66 0.928428
Target:  5'- aUCUACGCGcucgGAAAuCGcaaggaUGCGCCGcGGCc -3'
miRNA:   3'- cAGAUGCGC----UUUU-GC------AUGUGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 35604 0.66 0.928428
Target:  5'- cGUCggaGCuGAAGGCGcuCGCCGAGGa -3'
miRNA:   3'- -CAGaugCG-CUUUUGCauGUGGCUCCg -5'
33082 3' -49.8 NC_007497.1 + 2535 0.66 0.928428
Target:  5'- uUCUGCcCGG--GCGUgcGCGCCGGcGGCc -3'
miRNA:   3'- cAGAUGcGCUuuUGCA--UGUGGCU-CCG- -5'
33082 3' -49.8 NC_007497.1 + 16651 0.66 0.928428
Target:  5'- -aCU-CGCGcauGCGcUACGCCGGGaGCg -3'
miRNA:   3'- caGAuGCGCuuuUGC-AUGUGGCUC-CG- -5'
33082 3' -49.8 NC_007497.1 + 29985 0.66 0.927836
Target:  5'- -gCUAUGCGA--GCGUGucgcacaaaaagcCGCCGuaAGGCa -3'
miRNA:   3'- caGAUGCGCUuuUGCAU-------------GUGGC--UCCG- -5'
33082 3' -49.8 NC_007497.1 + 36499 0.66 0.926641
Target:  5'- -gCUGCGCGcgcAGAUGUcggcugccgaguucGCACUGuGGCa -3'
miRNA:   3'- caGAUGCGCu--UUUGCA--------------UGUGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 33879 0.66 0.915344
Target:  5'- ---cAgGCGAAGACGaaggggGCgaacgcaGCCGAGGCg -3'
miRNA:   3'- cagaUgCGCUUUUGCa-----UG-------UGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 348 0.67 0.909329
Target:  5'- gGUCgccCGCuGAAGugGUGCucgcgugugcgGCuCGAGGCa -3'
miRNA:   3'- -CAGau-GCG-CUUUugCAUG-----------UG-GCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 33115 0.67 0.909329
Target:  5'- gGUC-GCGCGAGAGCuGgccGCGCUGucgauGGGCg -3'
miRNA:   3'- -CAGaUGCGCUUUUG-Ca--UGUGGC-----UCCG- -5'
33082 3' -49.8 NC_007497.1 + 36237 0.67 0.909329
Target:  5'- aGUCUGCGCGAGcugaucgucAGCGUuaccgcgaacACgACCGAGu- -3'
miRNA:   3'- -CAGAUGCGCUU---------UUGCA----------UG-UGGCUCcg -5'
33082 3' -49.8 NC_007497.1 + 25423 0.67 0.909329
Target:  5'- cGUCUAUGaCGGAAACGgcaUGCugCGcGuGCg -3'
miRNA:   3'- -CAGAUGC-GCUUUUGC---AUGugGCuC-CG- -5'
33082 3' -49.8 NC_007497.1 + 32832 0.67 0.902362
Target:  5'- aGUCcGC-CGAGAACGccgcugggcGCGCCGAGGa -3'
miRNA:   3'- -CAGaUGcGCUUUUGCa--------UGUGGCUCCg -5'
33082 3' -49.8 NC_007497.1 + 6434 0.67 0.895099
Target:  5'- uGUggGCGCGAucuAC-UGCAUUGGGGCg -3'
miRNA:   3'- -CAgaUGCGCUuu-UGcAUGUGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 36689 0.67 0.879705
Target:  5'- uUCggcgACaGCGAugcccAAGCGguCGCCGAGGCg -3'
miRNA:   3'- cAGa---UG-CGCU-----UUUGCauGUGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 24253 0.68 0.871585
Target:  5'- cGUCgcugACGCu--GACGgACAUCGGGGUg -3'
miRNA:   3'- -CAGa---UGCGcuuUUGCaUGUGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 1700 0.68 0.871585
Target:  5'- uUCU-CGCGAGcgaugcacugGAgGUGCACCuggaggauGAGGCa -3'
miRNA:   3'- cAGAuGCGCUU----------UUgCAUGUGG--------CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.