miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33082 3' -49.8 NC_007497.1 + 1700 0.68 0.871585
Target:  5'- uUCU-CGCGAGcgaugcacugGAgGUGCACCuggaggauGAGGCa -3'
miRNA:   3'- cAGAuGCGCUU----------UUgCAUGUGG--------CUCCG- -5'
33082 3' -49.8 NC_007497.1 + 38214 0.68 0.845627
Target:  5'- gGUCgccgGCGCGA--ACGUGauccgggaCGAGGCg -3'
miRNA:   3'- -CAGa---UGCGCUuuUGCAUgug-----GCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 40128 0.68 0.845627
Target:  5'- ---aGCGCGgcGACGUGCagGCCGcgcugaacaaGGGCg -3'
miRNA:   3'- cagaUGCGCuuUUGCAUG--UGGC----------UCCG- -5'
33082 3' -49.8 NC_007497.1 + 28195 0.68 0.845627
Target:  5'- cUCgUACGCGGAa--GUGCugCGcGGCg -3'
miRNA:   3'- cAG-AUGCGCUUuugCAUGugGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 16451 0.69 0.827079
Target:  5'- cUCUACGcCGAAuccugcuGCGUGgACUGcGGCg -3'
miRNA:   3'- cAGAUGC-GCUUu------UGCAUgUGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 14988 0.69 0.827079
Target:  5'- cGUCgauCGC-AAGACGaACACCgGAGGUg -3'
miRNA:   3'- -CAGau-GCGcUUUUGCaUGUGG-CUCCG- -5'
33082 3' -49.8 NC_007497.1 + 35635 0.69 0.826127
Target:  5'- ---gACGCGAucGCGcGCggcauggGCCGGGGCa -3'
miRNA:   3'- cagaUGCGCUuuUGCaUG-------UGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 26538 0.7 0.776979
Target:  5'- cGUCaGCGCGGAAACG-AUGCUGAuGGg -3'
miRNA:   3'- -CAGaUGCGCUUUUGCaUGUGGCU-CCg -5'
33082 3' -49.8 NC_007497.1 + 24283 0.7 0.744849
Target:  5'- -gCUACGUGggGAgCGuUACuGCCGuGGCg -3'
miRNA:   3'- caGAUGCGCuuUU-GC-AUG-UGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 40412 0.71 0.722781
Target:  5'- cGUCcGCGCGGAAGgGccgACCGAGGUc -3'
miRNA:   3'- -CAGaUGCGCUUUUgCaugUGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 35578 0.71 0.711593
Target:  5'- ---cGCGCGAucGCGUcggccACGCCG-GGCa -3'
miRNA:   3'- cagaUGCGCUuuUGCA-----UGUGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 5861 0.72 0.64311
Target:  5'- -aCU-CGCGGAGugGUugGC-GAGGCg -3'
miRNA:   3'- caGAuGCGCUUUugCAugUGgCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 17357 0.72 0.641958
Target:  5'- -cCUGCucguaugGUGuuGACGUGCGCgCGAGGCu -3'
miRNA:   3'- caGAUG-------CGCuuUUGCAUGUG-GCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 14089 0.72 0.631587
Target:  5'- cUCUACGCuGAAAccugcuGCGUggACGCCGGcGGCc -3'
miRNA:   3'- cAGAUGCG-CUUU------UGCA--UGUGGCU-CCG- -5'
33082 3' -49.8 NC_007497.1 + 5472 0.73 0.597067
Target:  5'- aGUCcAUGCGAcAAGCGUuucaACGCUGGGGUa -3'
miRNA:   3'- -CAGaUGCGCU-UUUGCA----UGUGGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 17276 0.75 0.474826
Target:  5'- -cCUGCGCGG--GCG-GCugCGGGGCg -3'
miRNA:   3'- caGAUGCGCUuuUGCaUGugGCUCCG- -5'
33082 3' -49.8 NC_007497.1 + 7185 0.76 0.433443
Target:  5'- ---aACGCGAAGAUcagGUGCGCCG-GGCa -3'
miRNA:   3'- cagaUGCGCUUUUG---CAUGUGGCuCCG- -5'
33082 3' -49.8 NC_007497.1 + 37715 1.12 0.00215
Target:  5'- uGUCUACGCGAAAACGUACACCGAGGCc -3'
miRNA:   3'- -CAGAUGCGCUUUUGCAUGUGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.