miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33082 5' -55 NC_007497.1 + 1718 0.65 0.704809
Target:  5'- cGGCCGcACCcagcggGGAUCAcUCGG-CGCGa- -3'
miRNA:   3'- aCCGGC-UGG------UCUAGU-AGCUaGCGCac -5'
33082 5' -55 NC_007497.1 + 19913 0.66 0.693845
Target:  5'- aGGCCaGACC--GUCGUgCGAgcaGCGUGg -3'
miRNA:   3'- aCCGG-CUGGucUAGUA-GCUag-CGCAC- -5'
33082 5' -55 NC_007497.1 + 17611 0.66 0.66063
Target:  5'- cGGCUGGcCCGGAUUGgcuugCGAgaaugcggCGCGUGc -3'
miRNA:   3'- aCCGGCU-GGUCUAGUa----GCUa-------GCGCAC- -5'
33082 5' -55 NC_007497.1 + 24983 0.66 0.66063
Target:  5'- aUGGUCGGCCAGGcggUCAacagCGAUCugcacuugGCGUa -3'
miRNA:   3'- -ACCGGCUGGUCU---AGUa---GCUAG--------CGCAc -5'
33082 5' -55 NC_007497.1 + 2082 0.67 0.638332
Target:  5'- -cGCCGAagCAGGUCAaguUCGA-CGUGUGg -3'
miRNA:   3'- acCGGCUg-GUCUAGU---AGCUaGCGCAC- -5'
33082 5' -55 NC_007497.1 + 17468 0.67 0.627169
Target:  5'- aUGGUCGGCgGGAUCGUgGAgccaugCGCuUGa -3'
miRNA:   3'- -ACCGGCUGgUCUAGUAgCUa-----GCGcAC- -5'
33082 5' -55 NC_007497.1 + 3320 0.67 0.604866
Target:  5'- cGGCCGuggcACCGaggagcacuGGUCGaCGGUUGCGUGu -3'
miRNA:   3'- aCCGGC----UGGU---------CUAGUaGCUAGCGCAC- -5'
33082 5' -55 NC_007497.1 + 29209 0.68 0.571615
Target:  5'- aGGCUGuACgGGAUCGcuggcacgcguuUCGggCGCGUGc -3'
miRNA:   3'- aCCGGC-UGgUCUAGU------------AGCuaGCGCAC- -5'
33082 5' -55 NC_007497.1 + 37982 0.68 0.560621
Target:  5'- cGGCCGGCguucGAcgCGUCGAUCGCu-- -3'
miRNA:   3'- aCCGGCUGgu--CUa-GUAGCUAGCGcac -5'
33082 5' -55 NC_007497.1 + 37626 0.69 0.521589
Target:  5'- cUGGUCGGCCAGcgaGUCGGccucgguguacguuuUCGCGUa -3'
miRNA:   3'- -ACCGGCUGGUCuagUAGCU---------------AGCGCAc -5'
33082 5' -55 NC_007497.1 + 41340 0.7 0.455093
Target:  5'- cGG-CGACCGGAUCGUCag-CGCGa- -3'
miRNA:   3'- aCCgGCUGGUCUAGUAGcuaGCGCac -5'
33082 5' -55 NC_007497.1 + 32933 0.7 0.435259
Target:  5'- aGGCCGACCAGcUCGaacgUGAaCGCGg- -3'
miRNA:   3'- aCCGGCUGGUCuAGUa---GCUaGCGCac -5'
33082 5' -55 NC_007497.1 + 23706 0.71 0.397143
Target:  5'- cGGCCGGCCgcaguGGGUCAcggccggCGGcCGCGUGc -3'
miRNA:   3'- aCCGGCUGG-----UCUAGUa------GCUaGCGCAC- -5'
33082 5' -55 NC_007497.1 + 15010 0.73 0.30403
Target:  5'- cGGCCGGCUuuGAUCAgcgccgcgUCGAUCGCa-- -3'
miRNA:   3'- aCCGGCUGGu-CUAGU--------AGCUAGCGcac -5'
33082 5' -55 NC_007497.1 + 26336 0.74 0.260747
Target:  5'- cGGCUGuACCAGAUC-UCGGUgcgcUGCGUGu -3'
miRNA:   3'- aCCGGC-UGGUCUAGuAGCUA----GCGCAC- -5'
33082 5' -55 NC_007497.1 + 37681 1.09 0.000838
Target:  5'- cUGGCCGACCAGAUCAUCGAUCGCGUGg -3'
miRNA:   3'- -ACCGGCUGGUCUAGUAGCUAGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.