miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33083 3' -62.9 NC_007497.1 + 28720 0.66 0.334707
Target:  5'- cCGGuuCGaAGGuCGCGaGCUCGgGCAUCu -3'
miRNA:   3'- -GCCcuGC-UCC-GCGCgCGAGCgCGUGG- -5'
33083 3' -62.9 NC_007497.1 + 32864 0.66 0.327025
Target:  5'- uGGcGCGAGcCGgGCGCUCGCucuGUAUCa -3'
miRNA:   3'- gCCcUGCUCcGCgCGCGAGCG---CGUGG- -5'
33083 3' -62.9 NC_007497.1 + 14824 0.66 0.327025
Target:  5'- aCGGaucGACGucGGUGCGC-UUCGUGCGCa -3'
miRNA:   3'- -GCC---CUGCu-CCGCGCGcGAGCGCGUGg -5'
33083 3' -62.9 NC_007497.1 + 17254 0.66 0.326264
Target:  5'- -cGGACGAGcaGCGCagcacgcucgaaaGC-CUCGCGCGCa -3'
miRNA:   3'- gcCCUGCUC--CGCG-------------CGcGAGCGCGUGg -5'
33083 3' -62.9 NC_007497.1 + 17375 0.66 0.312054
Target:  5'- gCGGGGCGAuGaGCGgGCGaa-GCGCAa- -3'
miRNA:   3'- -GCCCUGCU-C-CGCgCGCgagCGCGUgg -5'
33083 3' -62.9 NC_007497.1 + 15255 0.66 0.312054
Target:  5'- cCGcGGACGccGGCcgaGCGcCGCgaggCGCGCAUCc -3'
miRNA:   3'- -GC-CCUGCu-CCG---CGC-GCGa---GCGCGUGG- -5'
33083 3' -62.9 NC_007497.1 + 2439 0.67 0.290585
Target:  5'- cCGGuGCGccgcuGGGCGUucGCGCggCGaCGCGCCa -3'
miRNA:   3'- -GCCcUGC-----UCCGCG--CGCGa-GC-GCGUGG- -5'
33083 3' -62.9 NC_007497.1 + 4146 0.67 0.276925
Target:  5'- aCGGGA--AGGCGCGCGagcucaUCGCgGCGgUa -3'
miRNA:   3'- -GCCCUgcUCCGCGCGCg-----AGCG-CGUgG- -5'
33083 3' -62.9 NC_007497.1 + 8692 0.67 0.276925
Target:  5'- gCGGG-CGGGGCGCGUcgGC-CGCccggucgugugGCugCg -3'
miRNA:   3'- -GCCCuGCUCCGCGCG--CGaGCG-----------CGugG- -5'
33083 3' -62.9 NC_007497.1 + 2051 0.67 0.270289
Target:  5'- uCGGGcuuuCGAGGaauGgGCGCccgugCGCGCGCg -3'
miRNA:   3'- -GCCCu---GCUCCg--CgCGCGa----GCGCGUGg -5'
33083 3' -62.9 NC_007497.1 + 31949 0.67 0.270289
Target:  5'- -aGGcCGucGGCuGCGCGCUgCGUGUACCc -3'
miRNA:   3'- gcCCuGCu-CCG-CGCGCGA-GCGCGUGG- -5'
33083 3' -62.9 NC_007497.1 + 13827 0.67 0.257403
Target:  5'- aCGGGACGccgcAGGgGC-CGC-CGCaggggGCGCCg -3'
miRNA:   3'- -GCCCUGC----UCCgCGcGCGaGCG-----CGUGG- -5'
33083 3' -62.9 NC_007497.1 + 34941 0.68 0.251151
Target:  5'- cCGGGACGccguaugcGGC-CGUGaUCGCGCGCg -3'
miRNA:   3'- -GCCCUGCu-------CCGcGCGCgAGCGCGUGg -5'
33083 3' -62.9 NC_007497.1 + 38121 0.68 0.2493
Target:  5'- uCGGuGcGCGAGcGCGCGC-CUCGUcccggaucacguucGCGCCg -3'
miRNA:   3'- -GCC-C-UGCUC-CGCGCGcGAGCG--------------CGUGG- -5'
33083 3' -62.9 NC_007497.1 + 2540 0.68 0.24746
Target:  5'- -cGGACGAauacaugcgcgugauGGCGCGuCGC-CGCGCgaacGCCc -3'
miRNA:   3'- gcCCUGCU---------------CCGCGC-GCGaGCGCG----UGG- -5'
33083 3' -62.9 NC_007497.1 + 15243 0.68 0.245024
Target:  5'- aGGGucguguacgGCGAGaGCGCGCGCUgGaUGUauGCCc -3'
miRNA:   3'- gCCC---------UGCUC-CGCGCGCGAgC-GCG--UGG- -5'
33083 3' -62.9 NC_007497.1 + 6196 0.68 0.245024
Target:  5'- uGGaGGCGuGGGCGCGCGa--GCGCGg- -3'
miRNA:   3'- gCC-CUGC-UCCGCGCGCgagCGCGUgg -5'
33083 3' -62.9 NC_007497.1 + 16363 0.68 0.239617
Target:  5'- aGGcGAUGAGGCauaucgGUGCGCcgcuguugaacggaGCGCGCCg -3'
miRNA:   3'- gCC-CUGCUCCG------CGCGCGag------------CGCGUGG- -5'
33083 3' -62.9 NC_007497.1 + 34119 0.68 0.233143
Target:  5'- --cGACGAGuCGCGCaaGCUCGCGCgACUu -3'
miRNA:   3'- gccCUGCUCcGCGCG--CGAGCGCG-UGG- -5'
33083 3' -62.9 NC_007497.1 + 21247 0.68 0.233143
Target:  5'- uCGGaaauuGugGA-GCGCGCGCUCaUGCGCUa -3'
miRNA:   3'- -GCC-----CugCUcCGCGCGCGAGcGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.