miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33085 3' -48.2 NC_007497.1 + 17680 0.66 0.971062
Target:  5'- --uAGAGUA-CGGCgCGAGCUCaucGCGCg -3'
miRNA:   3'- gacUUUUAUgGCCG-GCUUGAGa--UGCG- -5'
33085 3' -48.2 NC_007497.1 + 12040 0.66 0.967675
Target:  5'- gUGAucg-GCCGcGCCGAguACUCgaAUGCg -3'
miRNA:   3'- gACUuuuaUGGC-CGGCU--UGAGa-UGCG- -5'
33085 3' -48.2 NC_007497.1 + 18505 0.66 0.964016
Target:  5'- -aGAGAAcugGCCGGCCcGACgauuCGCg -3'
miRNA:   3'- gaCUUUUa--UGGCCGGcUUGagauGCG- -5'
33085 3' -48.2 NC_007497.1 + 4300 0.66 0.964016
Target:  5'- gCUGGcuuuuGUGcCCGGuCCGAuugUUCUGCGCc -3'
miRNA:   3'- -GACUuu---UAU-GGCC-GGCUu--GAGAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 33601 0.67 0.957575
Target:  5'- aCUGGAAGUcgcagguaacguugcACgGGCgCGuGCUgCUGCGCu -3'
miRNA:   3'- -GACUUUUA---------------UGgCCG-GCuUGA-GAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 25353 0.67 0.951328
Target:  5'- uUGAcgGUGCaGGCCGucuGCUCcucgAUGCg -3'
miRNA:   3'- gACUuuUAUGgCCGGCu--UGAGa---UGCG- -5'
33085 3' -48.2 NC_007497.1 + 37909 0.67 0.950388
Target:  5'- cCUGAgcgaucgacgcucGAAcGCCGGCCGcaugaauGGCUCUGCc- -3'
miRNA:   3'- -GACU-------------UUUaUGGCCGGC-------UUGAGAUGcg -5'
33085 3' -48.2 NC_007497.1 + 34440 0.67 0.946507
Target:  5'- -cGAcAAAUACCGGCa--GCUC-ACGCc -3'
miRNA:   3'- gaCU-UUUAUGGCCGgcuUGAGaUGCG- -5'
33085 3' -48.2 NC_007497.1 + 39922 0.67 0.946507
Target:  5'- uUGGAGAaACCGGCCuucGAaaccgGCUggACGCg -3'
miRNA:   3'- gACUUUUaUGGCCGG---CU-----UGAgaUGCG- -5'
33085 3' -48.2 NC_007497.1 + 35231 0.67 0.941382
Target:  5'- -gGAAAGcgcUGCCGcGCUGGugUCUcuugagaagGCGCg -3'
miRNA:   3'- gaCUUUU---AUGGC-CGGCUugAGA---------UGCG- -5'
33085 3' -48.2 NC_007497.1 + 25101 0.67 0.941382
Target:  5'- gCUGAuuccACCGGCauugauggaaaCGAcgggagacgGCUCUGCGCc -3'
miRNA:   3'- -GACUuuuaUGGCCG-----------GCU---------UGAGAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 37742 0.67 0.935948
Target:  5'- -cGGcAAGU-CCGGCauguuccagauCGAugUCUACGCg -3'
miRNA:   3'- gaCU-UUUAuGGCCG-----------GCUugAGAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 2557 0.67 0.935948
Target:  5'- cCUGAAGAagcACCGcCCGGACgaauacaUGCGCg -3'
miRNA:   3'- -GACUUUUa--UGGCcGGCUUGag-----AUGCG- -5'
33085 3' -48.2 NC_007497.1 + 35145 0.67 0.935388
Target:  5'- -cGGAGGUcgcggcGCaGGCCGAGCUUgccggcaUGCGCg -3'
miRNA:   3'- gaCUUUUA------UGgCCGGCUUGAG-------AUGCG- -5'
33085 3' -48.2 NC_007497.1 + 40768 0.68 0.930205
Target:  5'- --cGAGAUGCCGGCCcg---UUGCGCa -3'
miRNA:   3'- gacUUUUAUGGCCGGcuugaGAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 1775 0.68 0.917786
Target:  5'- gCUGG--GUG-CGGCCGGGagugCUGCGCa -3'
miRNA:   3'- -GACUuuUAUgGCCGGCUUga--GAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 39427 0.68 0.917786
Target:  5'- -cGGAcAUGCCGGauguggcggCGAACUCgACGCc -3'
miRNA:   3'- gaCUUuUAUGGCCg--------GCUUGAGaUGCG- -5'
33085 3' -48.2 NC_007497.1 + 26766 0.69 0.896839
Target:  5'- -cGAccGUcACCGGCCGcuGCugaaUCUGCGCg -3'
miRNA:   3'- gaCUuuUA-UGGCCGGCu-UG----AGAUGCG- -5'
33085 3' -48.2 NC_007497.1 + 12781 0.69 0.88925
Target:  5'- -------aGCCGGCCGGuuGCUCccuCGCg -3'
miRNA:   3'- gacuuuuaUGGCCGGCU--UGAGau-GCG- -5'
33085 3' -48.2 NC_007497.1 + 35759 0.69 0.88925
Target:  5'- gCUGuccggcGUAUCGGCCGAcacaGCgcggCUugGCa -3'
miRNA:   3'- -GACuuu---UAUGGCCGGCU----UGa---GAugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.