miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33085 5' -54 NC_007497.1 + 30647 0.66 0.775329
Target:  5'- -uGCACAGCGaUCGGCggCGAUgUGCUGc -3'
miRNA:   3'- ccUGUGUCGCaAGCCGg-GCUA-AUGGC- -5'
33085 5' -54 NC_007497.1 + 5672 0.66 0.775329
Target:  5'- -uGCuuCGGCGUaCGGCCgGAUUGCg- -3'
miRNA:   3'- ccUGu-GUCGCAaGCCGGgCUAAUGgc -5'
33085 5' -54 NC_007497.1 + 41009 0.66 0.744248
Target:  5'- gGGGCuuGCGGCGUcggcagccUCGGUCaucgCGAUgGCCGg -3'
miRNA:   3'- -CCUG--UGUCGCA--------AGCCGG----GCUAaUGGC- -5'
33085 5' -54 NC_007497.1 + 38891 0.66 0.744248
Target:  5'- cGACGCcGCGacacagUCGGCggCGAUUACCu -3'
miRNA:   3'- cCUGUGuCGCa-----AGCCGg-GCUAAUGGc -5'
33085 5' -54 NC_007497.1 + 17270 0.66 0.744248
Target:  5'- cGGGCgGCuGCGgggCGGCCgCGAUU-CCu -3'
miRNA:   3'- -CCUG-UGuCGCaa-GCCGG-GCUAAuGGc -5'
33085 5' -54 NC_007497.1 + 35519 0.66 0.733639
Target:  5'- cGACGCGuUGUUCGGCaagguCGAUgugACCGu -3'
miRNA:   3'- cCUGUGUcGCAAGCCGg----GCUAa--UGGC- -5'
33085 5' -54 NC_007497.1 + 15966 0.67 0.727223
Target:  5'- uGGugACAGCGcUCGGCgaguucgaucucgauCCGugcgcGCCGa -3'
miRNA:   3'- -CCugUGUCGCaAGCCG---------------GGCuaa--UGGC- -5'
33085 5' -54 NC_007497.1 + 10945 0.67 0.712121
Target:  5'- cGGuaGCGCAGCGUUCGGUgCGcGUUGg-- -3'
miRNA:   3'- -CC--UGUGUCGCAAGCCGgGC-UAAUggc -5'
33085 5' -54 NC_007497.1 + 27245 0.67 0.705599
Target:  5'- cGGCauggACGGCGUgcuggUCGGUCCGGggcaggugaucgcuaUUGCCGa -3'
miRNA:   3'- cCUG----UGUCGCA-----AGCCGGGCU---------------AAUGGC- -5'
33085 5' -54 NC_007497.1 + 32009 0.67 0.701236
Target:  5'- -cGCGCAGCcgaCGGCCUGAauaACCGg -3'
miRNA:   3'- ccUGUGUCGcaaGCCGGGCUaa-UGGC- -5'
33085 5' -54 NC_007497.1 + 2129 0.67 0.701236
Target:  5'- cGGcuGCGCAGCGUgucacgcaUGGCUCGAUcagaACCGc -3'
miRNA:   3'- -CC--UGUGUCGCAa-------GCCGGGCUAa---UGGC- -5'
33085 5' -54 NC_007497.1 + 39471 0.67 0.690282
Target:  5'- gGGGCAgcCGGCGacgcuggCGGgcuaUCCGGUUACCGa -3'
miRNA:   3'- -CCUGU--GUCGCaa-----GCC----GGGCUAAUGGC- -5'
33085 5' -54 NC_007497.1 + 11781 0.67 0.67927
Target:  5'- cGGGCGCacuGGCGguaUCGGuuCCCGGUUuCCa -3'
miRNA:   3'- -CCUGUG---UCGCa--AGCC--GGGCUAAuGGc -5'
33085 5' -54 NC_007497.1 + 36868 0.67 0.668213
Target:  5'- aGGAC-CGcGCGUUCuGGCUCGAU--CCGc -3'
miRNA:   3'- -CCUGuGU-CGCAAG-CCGGGCUAauGGC- -5'
33085 5' -54 NC_007497.1 + 36536 0.69 0.601515
Target:  5'- uGACACuGGCGcugCGGCUCGGcaggacgcUUGCCGa -3'
miRNA:   3'- cCUGUG-UCGCaa-GCCGGGCU--------AAUGGC- -5'
33085 5' -54 NC_007497.1 + 17095 0.7 0.525006
Target:  5'- aGAUGCGGCG--CGGCCUGcUUGCCa -3'
miRNA:   3'- cCUGUGUCGCaaGCCGGGCuAAUGGc -5'
33085 5' -54 NC_007497.1 + 33471 0.71 0.471647
Target:  5'- cGGACGCgGGCGggCGGCgcccguuCCGA--GCCGg -3'
miRNA:   3'- -CCUGUG-UCGCaaGCCG-------GGCUaaUGGC- -5'
33085 5' -54 NC_007497.1 + 36020 0.76 0.252104
Target:  5'- cGGcCGCGGCGUUCGGCauccaucagcucgUCGAUuaUGCCGa -3'
miRNA:   3'- -CCuGUGUCGCAAGCCG-------------GGCUA--AUGGC- -5'
33085 5' -54 NC_007497.1 + 38719 1.12 0.000774
Target:  5'- aGGACACAGCGUUCGGCCCGAUUACCGa -3'
miRNA:   3'- -CCUGUGUCGCAAGCCGGGCUAAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.