Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33086 | 5' | -48.1 | NC_007497.1 | + | 2438 | 0.66 | 0.969167 |
Target: 5'- gCCgGUGCGccGCUGggCguucGCGCGGCGAc -3' miRNA: 3'- -GG-CAUGCa-UGACaaGa---UGUGCUGCUu -5' |
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33086 | 5' | -48.1 | NC_007497.1 | + | 39342 | 0.66 | 0.961826 |
Target: 5'- -gGUucGCGUGCUGcgCgauccgUACACGGCGAa -3' miRNA: 3'- ggCA--UGCAUGACaaG------AUGUGCUGCUu -5' |
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33086 | 5' | -48.1 | NC_007497.1 | + | 23794 | 0.66 | 0.961826 |
Target: 5'- gCgGUGCGUACUGcagCaGCacaACGGCGAAg -3' miRNA: 3'- -GgCAUGCAUGACaa-GaUG---UGCUGCUU- -5' |
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33086 | 5' | -48.1 | NC_007497.1 | + | 39309 | 1.09 | 0.004777 |
Target: 5'- gCCGUACGUACUGUUCUACACGACGAAg -3' miRNA: 3'- -GGCAUGCAUGACAAGAUGUGCUGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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