Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33087 | 3' | -51.9 | NC_007497.1 | + | 35819 | 0.67 | 0.818484 |
Target: 5'- cGUCGAGCGGcugccgcGUUGCUUGCGcgaugcgcagcACGUCGu -3' miRNA: 3'- -CGGCUUGCC-------CGACGAAUGCa----------UGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 4282 | 0.67 | 0.789922 |
Target: 5'- cGCCGAucagcACGGGCggcugGCUUuuGUGCccgGUCc -3' miRNA: 3'- -CGGCU-----UGCCCGa----CGAAugCAUG---UAGc -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 40575 | 0.67 | 0.779717 |
Target: 5'- cGCCGGAaacgccacgcCGGGCgcugGCgaagACGUugcaGCGUCGc -3' miRNA: 3'- -CGGCUU----------GCCCGa---CGaa--UGCA----UGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 21334 | 0.68 | 0.75883 |
Target: 5'- cGCCGGACGGcucaGCUcGCUgucgcuagacaGCGaGCAUCGg -3' miRNA: 3'- -CGGCUUGCC----CGA-CGAa----------UGCaUGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 30942 | 0.68 | 0.75883 |
Target: 5'- cGUCGAuuguugGCGGGCaGUUUGCGgGgAUCGa -3' miRNA: 3'- -CGGCU------UGCCCGaCGAAUGCaUgUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 15722 | 0.68 | 0.748174 |
Target: 5'- cGCUGAA-GGaGaCUGC-UACGUGCGUUGg -3' miRNA: 3'- -CGGCUUgCC-C-GACGaAUGCAUGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 16853 | 0.68 | 0.726498 |
Target: 5'- cGCUGAuGCGGGCUGCU--CGUcCGcCGg -3' miRNA: 3'- -CGGCU-UGCCCGACGAauGCAuGUaGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 40316 | 0.7 | 0.648124 |
Target: 5'- cGCCGugaaGGCGGGuCUGCcgACGUccgacGCGUUGg -3' miRNA: 3'- -CGGC----UUGCCC-GACGaaUGCA-----UGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 23573 | 0.72 | 0.535616 |
Target: 5'- uGCUGGGCGcGGCgGCggGCGccgGCGUCGu -3' miRNA: 3'- -CGGCUUGC-CCGaCGaaUGCa--UGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 27048 | 0.72 | 0.503013 |
Target: 5'- aGUCGGugGacGGCgacacGCUUACGUugGUCGa -3' miRNA: 3'- -CGGCUugC--CCGa----CGAAUGCAugUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 25768 | 0.76 | 0.306234 |
Target: 5'- cUCGGACGGGC-GC--ACGUACAUCGc -3' miRNA: 3'- cGGCUUGCCCGaCGaaUGCAUGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 39615 | 0.77 | 0.268985 |
Target: 5'- cGCCGAACGGG-UGCUUcGCG-GCAUUGg -3' miRNA: 3'- -CGGCUUGCCCgACGAA-UGCaUGUAGC- -5' |
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33087 | 3' | -51.9 | NC_007497.1 | + | 39721 | 1.11 | 0.00141 |
Target: 5'- aGCCGAACGGGCUGCUUACGUACAUCGc -3' miRNA: 3'- -CGGCUUGCCCGACGAAUGCAUGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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