miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 5' -54.9 NC_007497.1 + 33318 0.66 0.721153
Target:  5'- aCCGAUcugGCgGCGAAGCGCaCGaagcugUCGGa -3'
miRNA:   3'- cGGUUA---CGgCGCUUCGUGgGCa-----AGCC- -5'
33087 5' -54.9 NC_007497.1 + 3546 0.66 0.710372
Target:  5'- uGCCAAUGCCccuucaccucguGCGccucGAGCuggCCGUUCGc -3'
miRNA:   3'- -CGGUUACGG------------CGC----UUCGug-GGCAAGCc -5'
33087 5' -54.9 NC_007497.1 + 26109 0.66 0.710372
Target:  5'- uGCCGAUcugGCCGCGAaaguAGUcCUCGUaugccgccucaUCGGu -3'
miRNA:   3'- -CGGUUA---CGGCGCU----UCGuGGGCA-----------AGCC- -5'
33087 5' -54.9 NC_007497.1 + 27902 0.66 0.692965
Target:  5'- uGCguGUGCCGUGAAcuacgauccugagacGCGCaCGUacUCGGg -3'
miRNA:   3'- -CGguUACGGCGCUU---------------CGUGgGCA--AGCC- -5'
33087 5' -54.9 NC_007497.1 + 2323 0.66 0.688588
Target:  5'- cGCCG----UGCGAAGCGCCCGaccgUGGc -3'
miRNA:   3'- -CGGUuacgGCGCUUCGUGGGCaa--GCC- -5'
33087 5' -54.9 NC_007497.1 + 39253 0.66 0.682006
Target:  5'- aGCCGAUGCgCGCGAugaAGguCgCCGccagcgaguaagcgUCGGg -3'
miRNA:   3'- -CGGUUACG-GCGCU---UCguG-GGCa-------------AGCC- -5'
33087 5' -54.9 NC_007497.1 + 32619 0.66 0.677608
Target:  5'- cGCCAAUGCCGCuc-GCGCagcgaaCCGcgCGa -3'
miRNA:   3'- -CGGUUACGGCGcuuCGUG------GGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 27026 0.67 0.666584
Target:  5'- cGCCcgacggcagGAUcGCCGUGAAGCgaucACCCGgcgccacugCGGg -3'
miRNA:   3'- -CGG---------UUA-CGGCGCUUCG----UGGGCaa-------GCC- -5'
33087 5' -54.9 NC_007497.1 + 23928 0.67 0.666583
Target:  5'- cGCCGgaugaGUGCCGCGc-GCGCCUGgagCa- -3'
miRNA:   3'- -CGGU-----UACGGCGCuuCGUGGGCaa-Gcc -5'
33087 5' -54.9 NC_007497.1 + 10960 0.67 0.655527
Target:  5'- cGCCccuUGCUgggGCGGuAGCGCagCGUUCGGu -3'
miRNA:   3'- -CGGuu-ACGG---CGCU-UCGUGg-GCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 1285 0.67 0.655527
Target:  5'- -aCGAUGaUgGCGAAGCGCCUG--CGGg -3'
miRNA:   3'- cgGUUAC-GgCGCUUCGUGGGCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 23685 0.67 0.644448
Target:  5'- gGCCGGcgGCCGCGu-GCuGCCCGgacUGGu -3'
miRNA:   3'- -CGGUUa-CGGCGCuuCG-UGGGCaa-GCC- -5'
33087 5' -54.9 NC_007497.1 + 32828 0.67 0.633357
Target:  5'- cGCCGAgaacGCCGCuGGGCGCgCCGa--GGa -3'
miRNA:   3'- -CGGUUa---CGGCGcUUCGUG-GGCaagCC- -5'
33087 5' -54.9 NC_007497.1 + 2612 0.67 0.622266
Target:  5'- cGCCGcgGCCGcCGgcGCgcacGCCCGggCa- -3'
miRNA:   3'- -CGGUuaCGGC-GCuuCG----UGGGCaaGcc -5'
33087 5' -54.9 NC_007497.1 + 9707 0.67 0.622266
Target:  5'- aGCCGAcGUCGCGGccGGCGCgCCGggUGu -3'
miRNA:   3'- -CGGUUaCGGCGCU--UCGUG-GGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 13835 0.67 0.621157
Target:  5'- nGCCccUGCgGCGAcccaugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuuACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 34051 0.68 0.589083
Target:  5'- uGCCGAUG-CGUccuGCACCaGUUCGGu -3'
miRNA:   3'- -CGGUUACgGCGcuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 2408 0.68 0.587981
Target:  5'- cGCCuGUGCCGCGAugucgcgcuuagcAGUGCCgGUgCGc -3'
miRNA:   3'- -CGGuUACGGCGCU-------------UCGUGGgCAaGCc -5'
33087 5' -54.9 NC_007497.1 + 16342 0.68 0.578083
Target:  5'- cGCCGcUGuuGaaCGGAGCGCgCCGgccgUCGGc -3'
miRNA:   3'- -CGGUuACggC--GCUUCGUG-GGCa---AGCC- -5'
33087 5' -54.9 NC_007497.1 + 29147 0.68 0.567129
Target:  5'- aGCCGAgGCCGUGcGGGCACUg--UCGGu -3'
miRNA:   3'- -CGGUUaCGGCGC-UUCGUGGgcaAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.