miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 5' -54.9 NC_007497.1 + 39687 1.12 0.00064
Target:  5'- uGCCAAUGCCGCGAAGCACCCGUUCGGc -3'
miRNA:   3'- -CGGUUACGGCGCUUCGUGGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 34632 0.8 0.11126
Target:  5'- aGCCGGcggucGCCGCGGuGGCGCCuCGUUCGGc -3'
miRNA:   3'- -CGGUUa----CGGCGCU-UCGUGG-GCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 41075 0.77 0.164647
Target:  5'- cGCCGAUGuuGCGAAGCGCCgCGcugauccgcUUCGcGg -3'
miRNA:   3'- -CGGUUACggCGCUUCGUGG-GC---------AAGC-C- -5'
33087 5' -54.9 NC_007497.1 + 10096 0.76 0.199227
Target:  5'- aGCCAucUGCgCGCGcAGGCugCCGcUCGGa -3'
miRNA:   3'- -CGGUu-ACG-GCGC-UUCGugGGCaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 5887 0.76 0.215895
Target:  5'- cGUCA--GCCGaCGAAGCugCCGggCGGa -3'
miRNA:   3'- -CGGUuaCGGC-GCUUCGugGGCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 13769 0.72 0.375453
Target:  5'- gGCCcGUGCgGCGAcccaugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuUACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 29455 0.71 0.384388
Target:  5'- cGCCGGUuuucucgacgucgGCCGCGAcguGGCGCUCGaacCGGg -3'
miRNA:   3'- -CGGUUA-------------CGGCGCU---UCGUGGGCaa-GCC- -5'
33087 5' -54.9 NC_007497.1 + 26377 0.71 0.432086
Target:  5'- cGCCGA-GCCGCGAcGaCGCCaCGaaguuUUCGGa -3'
miRNA:   3'- -CGGUUaCGGCGCUuC-GUGG-GC-----AAGCC- -5'
33087 5' -54.9 NC_007497.1 + 42659 0.7 0.461706
Target:  5'- gGCCAGUcggucuacgaGUCGCGggGCAUUCGUUUu- -3'
miRNA:   3'- -CGGUUA----------CGGCGCuuCGUGGGCAAGcc -5'
33087 5' -54.9 NC_007497.1 + 34469 0.7 0.461707
Target:  5'- aGCCAGuucacUGCCGCGccAAGCGCCacCGUgccgaCGGu -3'
miRNA:   3'- -CGGUU-----ACGGCGC--UUCGUGG--GCAa----GCC- -5'
33087 5' -54.9 NC_007497.1 + 15266 0.7 0.471816
Target:  5'- gGCCGAgcGCCGCGAGGCGCgCauccagUGGa -3'
miRNA:   3'- -CGGUUa-CGGCGCUUCGUGgGcaa---GCC- -5'
33087 5' -54.9 NC_007497.1 + 39639 0.7 0.471816
Target:  5'- uGgCAccGcCCGCGAuguacguaAGCAgCCCGUUCGGc -3'
miRNA:   3'- -CgGUuaC-GGCGCU--------UCGU-GGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 2552 0.7 0.482037
Target:  5'- cGCCGGcgGCCGCGgcGCAUCCuugCGa -3'
miRNA:   3'- -CGGUUa-CGGCGCuuCGUGGGcaaGCc -5'
33087 5' -54.9 NC_007497.1 + 13868 0.69 0.491326
Target:  5'- gGCCcAUGCgGCGGccccugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuUACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 8498 0.69 0.513313
Target:  5'- gGCuCAGUGCC-CGAgauggaaaccuuGGCAgcuuuggcuauCCCGUUCGGc -3'
miRNA:   3'- -CG-GUUACGGcGCU------------UCGU-----------GGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 35972 0.69 0.523925
Target:  5'- gGCCGcgGCuuccgcguaucCGCGAAGCgACCCGcgCGc -3'
miRNA:   3'- -CGGUuaCG-----------GCGCUUCG-UGGGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 29696 0.69 0.534619
Target:  5'- gGCCAugcucgGCUGCGccGUGCC-GUUCGGa -3'
miRNA:   3'- -CGGUua----CGGCGCuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 16070 0.69 0.538918
Target:  5'- cGCgAAUGgCGCG-GGCGCgucuggcucaauccgCCGUUCGGu -3'
miRNA:   3'- -CGgUUACgGCGCuUCGUG---------------GGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 12305 0.68 0.556228
Target:  5'- cCCGAUGCCacCGAggacGGCACCCGccaagUCGa -3'
miRNA:   3'- cGGUUACGGc-GCU----UCGUGGGCa----AGCc -5'
33087 5' -54.9 NC_007497.1 + 30281 0.68 0.556228
Target:  5'- cGCCAuUGCU-CGAccGGCcauuGCUCGUUCGGg -3'
miRNA:   3'- -CGGUuACGGcGCU--UCG----UGGGCAAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.