miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 5' -54.9 NC_007497.1 + 1285 0.67 0.655527
Target:  5'- -aCGAUGaUgGCGAAGCGCCUG--CGGg -3'
miRNA:   3'- cgGUUAC-GgCGCUUCGUGGGCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 2323 0.66 0.688588
Target:  5'- cGCCG----UGCGAAGCGCCCGaccgUGGc -3'
miRNA:   3'- -CGGUuacgGCGCUUCGUGGGCaa--GCC- -5'
33087 5' -54.9 NC_007497.1 + 2408 0.68 0.587981
Target:  5'- cGCCuGUGCCGCGAugucgcgcuuagcAGUGCCgGUgCGc -3'
miRNA:   3'- -CGGuUACGGCGCU-------------UCGUGGgCAaGCc -5'
33087 5' -54.9 NC_007497.1 + 2552 0.7 0.482037
Target:  5'- cGCCGGcgGCCGCGgcGCAUCCuugCGa -3'
miRNA:   3'- -CGGUUa-CGGCGCuuCGUGGGcaaGCc -5'
33087 5' -54.9 NC_007497.1 + 2612 0.67 0.622266
Target:  5'- cGCCGcgGCCGcCGgcGCgcacGCCCGggCa- -3'
miRNA:   3'- -CGGUuaCGGC-GCuuCG----UGGGCaaGcc -5'
33087 5' -54.9 NC_007497.1 + 3179 0.68 0.556228
Target:  5'- uGCUGAUGCUGuCGAGGC-CCgGgcCGGu -3'
miRNA:   3'- -CGGUUACGGC-GCUUCGuGGgCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 3546 0.66 0.710372
Target:  5'- uGCCAAUGCCccuucaccucguGCGccucGAGCuggCCGUUCGc -3'
miRNA:   3'- -CGGUUACGG------------CGC----UUCGug-GGCAAGCc -5'
33087 5' -54.9 NC_007497.1 + 5887 0.76 0.215895
Target:  5'- cGUCA--GCCGaCGAAGCugCCGggCGGa -3'
miRNA:   3'- -CGGUuaCGGC-GCUUCGugGGCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 8498 0.69 0.513313
Target:  5'- gGCuCAGUGCC-CGAgauggaaaccuuGGCAgcuuuggcuauCCCGUUCGGc -3'
miRNA:   3'- -CG-GUUACGGcGCU------------UCGU-----------GGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 9707 0.67 0.622266
Target:  5'- aGCCGAcGUCGCGGccGGCGCgCCGggUGu -3'
miRNA:   3'- -CGGUUaCGGCGCU--UCGUG-GGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 10096 0.76 0.199227
Target:  5'- aGCCAucUGCgCGCGcAGGCugCCGcUCGGa -3'
miRNA:   3'- -CGGUu-ACG-GCGC-UUCGugGGCaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 10960 0.67 0.655527
Target:  5'- cGCCccuUGCUgggGCGGuAGCGCagCGUUCGGu -3'
miRNA:   3'- -CGGuu-ACGG---CGCU-UCGUGg-GCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 12003 0.68 0.567129
Target:  5'- uGCCGugacgauUGCCGCGAgcGGCGaaaccgguaCCGUgaUCGGc -3'
miRNA:   3'- -CGGUu------ACGGCGCU--UCGUg--------GGCA--AGCC- -5'
33087 5' -54.9 NC_007497.1 + 12305 0.68 0.556228
Target:  5'- cCCGAUGCCacCGAggacGGCACCCGccaagUCGa -3'
miRNA:   3'- cGGUUACGGc-GCU----UCGUGGGCa----AGCc -5'
33087 5' -54.9 NC_007497.1 + 13769 0.72 0.375453
Target:  5'- gGCCcGUGCgGCGAcccaugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuUACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 13835 0.67 0.621157
Target:  5'- nGCCccUGCgGCGAcccaugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuuACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 13868 0.69 0.491326
Target:  5'- gGCCcAUGCgGCGGccccugcGGCGuCCCGUgCGGc -3'
miRNA:   3'- -CGGuUACGgCGCU-------UCGU-GGGCAaGCC- -5'
33087 5' -54.9 NC_007497.1 + 15266 0.7 0.471816
Target:  5'- gGCCGAgcGCCGCGAGGCGCgCauccagUGGa -3'
miRNA:   3'- -CGGUUa-CGGCGCUUCGUGgGcaa---GCC- -5'
33087 5' -54.9 NC_007497.1 + 16070 0.69 0.538918
Target:  5'- cGCgAAUGgCGCG-GGCGCgucuggcucaauccgCCGUUCGGu -3'
miRNA:   3'- -CGgUUACgGCGCuUCGUG---------------GGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 16342 0.68 0.578083
Target:  5'- cGCCGcUGuuGaaCGGAGCGCgCCGgccgUCGGc -3'
miRNA:   3'- -CGGUuACggC--GCUUCGUG-GGCa---AGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.