miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 5' -54.9 NC_007497.1 + 23685 0.67 0.644448
Target:  5'- gGCCGGcgGCCGCGu-GCuGCCCGgacUGGu -3'
miRNA:   3'- -CGGUUa-CGGCGCuuCG-UGGGCaa-GCC- -5'
33087 5' -54.9 NC_007497.1 + 23919 0.68 0.556228
Target:  5'- cGCCAuugcagGCCGUGAugauCCCGaUCGGg -3'
miRNA:   3'- -CGGUua----CGGCGCUucguGGGCaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 23928 0.67 0.666583
Target:  5'- cGCCGgaugaGUGCCGCGc-GCGCCUGgagCa- -3'
miRNA:   3'- -CGGU-----UACGGCGCuuCGUGGGCaa-Gcc -5'
33087 5' -54.9 NC_007497.1 + 26109 0.66 0.710372
Target:  5'- uGCCGAUcugGCCGCGAaaguAGUcCUCGUaugccgccucaUCGGu -3'
miRNA:   3'- -CGGUUA---CGGCGCU----UCGuGGGCA-----------AGCC- -5'
33087 5' -54.9 NC_007497.1 + 26377 0.71 0.432086
Target:  5'- cGCCGA-GCCGCGAcGaCGCCaCGaaguuUUCGGa -3'
miRNA:   3'- -CGGUUaCGGCGCUuC-GUGG-GC-----AAGCC- -5'
33087 5' -54.9 NC_007497.1 + 27026 0.67 0.666584
Target:  5'- cGCCcgacggcagGAUcGCCGUGAAGCgaucACCCGgcgccacugCGGg -3'
miRNA:   3'- -CGG---------UUA-CGGCGCUUCG----UGGGCaa-------GCC- -5'
33087 5' -54.9 NC_007497.1 + 27902 0.66 0.692965
Target:  5'- uGCguGUGCCGUGAAcuacgauccugagacGCGCaCGUacUCGGg -3'
miRNA:   3'- -CGguUACGGCGCUU---------------CGUGgGCA--AGCC- -5'
33087 5' -54.9 NC_007497.1 + 29147 0.68 0.567129
Target:  5'- aGCCGAgGCCGUGcGGGCACUg--UCGGu -3'
miRNA:   3'- -CGGUUaCGGCGC-UUCGUGGgcaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 29455 0.71 0.384388
Target:  5'- cGCCGGUuuucucgacgucgGCCGCGAcguGGCGCUCGaacCGGg -3'
miRNA:   3'- -CGGUUA-------------CGGCGCU---UCGUGGGCaa-GCC- -5'
33087 5' -54.9 NC_007497.1 + 29696 0.69 0.534619
Target:  5'- gGCCAugcucgGCUGCGccGUGCC-GUUCGGa -3'
miRNA:   3'- -CGGUua----CGGCGCuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 30281 0.68 0.556228
Target:  5'- cGCCAuUGCU-CGAccGGCcauuGCUCGUUCGGg -3'
miRNA:   3'- -CGGUuACGGcGCU--UCG----UGGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 32619 0.66 0.677608
Target:  5'- cGCCAAUGCCGCuc-GCGCagcgaaCCGcgCGa -3'
miRNA:   3'- -CGGUUACGGCGcuuCGUG------GGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 32828 0.67 0.633357
Target:  5'- cGCCGAgaacGCCGCuGGGCGCgCCGa--GGa -3'
miRNA:   3'- -CGGUUa---CGGCGcUUCGUG-GGCaagCC- -5'
33087 5' -54.9 NC_007497.1 + 33318 0.66 0.721153
Target:  5'- aCCGAUcugGCgGCGAAGCGCaCGaagcugUCGGa -3'
miRNA:   3'- cGGUUA---CGgCGCUUCGUGgGCa-----AGCC- -5'
33087 5' -54.9 NC_007497.1 + 34051 0.68 0.589083
Target:  5'- uGCCGAUG-CGUccuGCACCaGUUCGGu -3'
miRNA:   3'- -CGGUUACgGCGcuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 34469 0.7 0.461707
Target:  5'- aGCCAGuucacUGCCGCGccAAGCGCCacCGUgccgaCGGu -3'
miRNA:   3'- -CGGUU-----ACGGCGC--UUCGUGG--GCAa----GCC- -5'
33087 5' -54.9 NC_007497.1 + 34632 0.8 0.11126
Target:  5'- aGCCGGcggucGCCGCGGuGGCGCCuCGUUCGGc -3'
miRNA:   3'- -CGGUUa----CGGCGCU-UCGUGG-GCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 35972 0.69 0.523925
Target:  5'- gGCCGcgGCuuccgcguaucCGCGAAGCgACCCGcgCGc -3'
miRNA:   3'- -CGGUuaCG-----------GCGCUUCG-UGGGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 36025 0.68 0.556228
Target:  5'- aGCCGcgGCCGCGGcguucGGCAUCCa----- -3'
miRNA:   3'- -CGGUuaCGGCGCU-----UCGUGGGcaagcc -5'
33087 5' -54.9 NC_007497.1 + 39253 0.66 0.682006
Target:  5'- aGCCGAUGCgCGCGAugaAGguCgCCGccagcgaguaagcgUCGGg -3'
miRNA:   3'- -CGGUUACG-GCGCU---UCguG-GGCa-------------AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.