miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33087 5' -54.9 NC_007497.1 + 32619 0.66 0.677608
Target:  5'- cGCCAAUGCCGCuc-GCGCagcgaaCCGcgCGa -3'
miRNA:   3'- -CGGUUACGGCGcuuCGUG------GGCaaGCc -5'
33087 5' -54.9 NC_007497.1 + 23919 0.68 0.556228
Target:  5'- cGCCAuugcagGCCGUGAugauCCCGaUCGGg -3'
miRNA:   3'- -CGGUua----CGGCGCUucguGGGCaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 12305 0.68 0.556228
Target:  5'- cCCGAUGCCacCGAggacGGCACCCGccaagUCGa -3'
miRNA:   3'- cGGUUACGGc-GCU----UCGUGGGCa----AGCc -5'
33087 5' -54.9 NC_007497.1 + 30281 0.68 0.556228
Target:  5'- cGCCAuUGCU-CGAccGGCcauuGCUCGUUCGGg -3'
miRNA:   3'- -CGGUuACGGcGCU--UCG----UGGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 12003 0.68 0.567129
Target:  5'- uGCCGugacgauUGCCGCGAgcGGCGaaaccgguaCCGUgaUCGGc -3'
miRNA:   3'- -CGGUu------ACGGCGCU--UCGUg--------GGCA--AGCC- -5'
33087 5' -54.9 NC_007497.1 + 44656 0.68 0.567129
Target:  5'- cGCCGAUGCuguCGCGggGCuguaGCCUGccgCGa -3'
miRNA:   3'- -CGGUUACG---GCGCuuCG----UGGGCaa-GCc -5'
33087 5' -54.9 NC_007497.1 + 2408 0.68 0.587981
Target:  5'- cGCCuGUGCCGCGAugucgcgcuuagcAGUGCCgGUgCGc -3'
miRNA:   3'- -CGGuUACGGCGCU-------------UCGUGGgCAaGCc -5'
33087 5' -54.9 NC_007497.1 + 34051 0.68 0.589083
Target:  5'- uGCCGAUG-CGUccuGCACCaGUUCGGu -3'
miRNA:   3'- -CGGUUACgGCGcuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 27026 0.67 0.666584
Target:  5'- cGCCcgacggcagGAUcGCCGUGAAGCgaucACCCGgcgccacugCGGg -3'
miRNA:   3'- -CGG---------UUA-CGGCGCUUCG----UGGGCaa-------GCC- -5'
33087 5' -54.9 NC_007497.1 + 3179 0.68 0.556228
Target:  5'- uGCUGAUGCUGuCGAGGC-CCgGgcCGGu -3'
miRNA:   3'- -CGGUUACGGC-GCUUCGuGGgCaaGCC- -5'
33087 5' -54.9 NC_007497.1 + 16070 0.69 0.538918
Target:  5'- cGCgAAUGgCGCG-GGCGCgucuggcucaauccgCCGUUCGGu -3'
miRNA:   3'- -CGgUUACgGCGCuUCGUG---------------GGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 29696 0.69 0.534619
Target:  5'- gGCCAugcucgGCUGCGccGUGCC-GUUCGGa -3'
miRNA:   3'- -CGGUua----CGGCGCuuCGUGGgCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 41075 0.77 0.164647
Target:  5'- cGCCGAUGuuGCGAAGCGCCgCGcugauccgcUUCGcGg -3'
miRNA:   3'- -CGGUUACggCGCUUCGUGG-GC---------AAGC-C- -5'
33087 5' -54.9 NC_007497.1 + 10096 0.76 0.199227
Target:  5'- aGCCAucUGCgCGCGcAGGCugCCGcUCGGa -3'
miRNA:   3'- -CGGUu-ACG-GCGC-UUCGugGGCaAGCC- -5'
33087 5' -54.9 NC_007497.1 + 34469 0.7 0.461707
Target:  5'- aGCCAGuucacUGCCGCGccAAGCGCCacCGUgccgaCGGu -3'
miRNA:   3'- -CGGUU-----ACGGCGC--UUCGUGG--GCAa----GCC- -5'
33087 5' -54.9 NC_007497.1 + 39639 0.7 0.471816
Target:  5'- uGgCAccGcCCGCGAuguacguaAGCAgCCCGUUCGGc -3'
miRNA:   3'- -CgGUuaC-GGCGCU--------UCGU-GGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 15266 0.7 0.471816
Target:  5'- gGCCGAgcGCCGCGAGGCGCgCauccagUGGa -3'
miRNA:   3'- -CGGUUa-CGGCGCUUCGUGgGcaa---GCC- -5'
33087 5' -54.9 NC_007497.1 + 2552 0.7 0.482037
Target:  5'- cGCCGGcgGCCGCGgcGCAUCCuugCGa -3'
miRNA:   3'- -CGGUUa-CGGCGCuuCGUGGGcaaGCc -5'
33087 5' -54.9 NC_007497.1 + 8498 0.69 0.513313
Target:  5'- gGCuCAGUGCC-CGAgauggaaaccuuGGCAgcuuuggcuauCCCGUUCGGc -3'
miRNA:   3'- -CG-GUUACGGcGCU------------UCGU-----------GGGCAAGCC- -5'
33087 5' -54.9 NC_007497.1 + 35972 0.69 0.523925
Target:  5'- gGCCGcgGCuuccgcguaucCGCGAAGCgACCCGcgCGc -3'
miRNA:   3'- -CGGUuaCG-----------GCGCUUCG-UGGGCaaGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.