miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33088 3' -58.2 NC_007497.1 + 585 0.66 0.494154
Target:  5'- cGCgGGGUaCGGCGGAaCAccagaacAGCCAuGCGa -3'
miRNA:   3'- -CGaCCCA-GCCGCUUcGU-------UCGGU-CGCa -5'
33088 3' -58.2 NC_007497.1 + 7981 0.66 0.484885
Target:  5'- gGUUGGGUUGuaGAGGCccGGUUGGCGg -3'
miRNA:   3'- -CGACCCAGCcgCUUCGu-UCGGUCGCa -5'
33088 3' -58.2 NC_007497.1 + 44446 0.66 0.474685
Target:  5'- gGCUGGG-CGaGgGcGGCAAGaaggaaCAGCGUg -3'
miRNA:   3'- -CGACCCaGC-CgCuUCGUUCg-----GUCGCA- -5'
33088 3' -58.2 NC_007497.1 + 1968 0.66 0.454615
Target:  5'- uGC-GGGcCGGCacaguuucaagcGAAGCAcggcauggGGCCGGCGa -3'
miRNA:   3'- -CGaCCCaGCCG------------CUUCGU--------UCGGUCGCa -5'
33088 3' -58.2 NC_007497.1 + 27995 0.67 0.444753
Target:  5'- --cGuGUCGGCGAucAGCGAGCUgugcgcauucGGCGUa -3'
miRNA:   3'- cgaCcCAGCCGCU--UCGUUCGG----------UCGCA- -5'
33088 3' -58.2 NC_007497.1 + 14905 0.67 0.425397
Target:  5'- uGUUGGGcgaugCGGCGAacAGCGuAGCgAGCa- -3'
miRNA:   3'- -CGACCCa----GCCGCU--UCGU-UCGgUCGca -5'
33088 3' -58.2 NC_007497.1 + 18773 0.67 0.395498
Target:  5'- cGCUGG--CGGCGAAGCugcgcagauacGCCGGCa- -3'
miRNA:   3'- -CGACCcaGCCGCUUCGuu---------CGGUCGca -5'
33088 3' -58.2 NC_007497.1 + 5827 0.68 0.370476
Target:  5'- aGCUucGUCGGCuGAcgAGCGAGCgCGGCGa -3'
miRNA:   3'- -CGAccCAGCCG-CU--UCGUUCG-GUCGCa -5'
33088 3' -58.2 NC_007497.1 + 34867 0.69 0.328552
Target:  5'- cGCUGGcGUUGGCGcAGC-AGCgAcGCGUc -3'
miRNA:   3'- -CGACC-CAGCCGCuUCGuUCGgU-CGCA- -5'
33088 3' -58.2 NC_007497.1 + 1228 0.69 0.312793
Target:  5'- --gGGGUCgauGGUGcuGGGCAGGCCGGCa- -3'
miRNA:   3'- cgaCCCAG---CCGC--UUCGUUCGGUCGca -5'
33088 3' -58.2 NC_007497.1 + 3742 0.71 0.242615
Target:  5'- uCUGGa--GGCgcgGAAGCAGGCCGGCGa -3'
miRNA:   3'- cGACCcagCCG---CUUCGUUCGGUCGCa -5'
33088 3' -58.2 NC_007497.1 + 41982 0.71 0.230257
Target:  5'- cGCUGGaGcuaGCGGAGCAAGCCgAGCGc -3'
miRNA:   3'- -CGACC-CagcCGCUUCGUUCGG-UCGCa -5'
33088 3' -58.2 NC_007497.1 + 14848 0.72 0.196343
Target:  5'- aGCa--GUCGGCGAcgAGCAAGCCAGaCGg -3'
miRNA:   3'- -CGaccCAGCCGCU--UCGUUCGGUC-GCa -5'
33088 3' -58.2 NC_007497.1 + 23133 0.72 0.191134
Target:  5'- uGCUGGc-CGGCGAugcgGGCAcGGUCAGCGUa -3'
miRNA:   3'- -CGACCcaGCCGCU----UCGU-UCGGUCGCA- -5'
33088 3' -58.2 NC_007497.1 + 23573 0.76 0.098089
Target:  5'- uGCUGGGcgCGGCGgcGgGcGCCGGCGUc -3'
miRNA:   3'- -CGACCCa-GCCGCuuCgUuCGGUCGCA- -5'
33088 3' -58.2 NC_007497.1 + 39937 1.08 0.000413
Target:  5'- gGCUGGGUCGGCGAAGCAAGCCAGCGUc -3'
miRNA:   3'- -CGACCCAGCCGCUUCGUUCGGUCGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.