miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33088 5' -56.1 NC_007497.1 + 25896 0.66 0.617948
Target:  5'- aCAGCaGCGGaCaGCGUUgCGGUCGCcGAa -3'
miRNA:   3'- -GUUG-CGCC-GaUGCAAgGUCGGCGaCU- -5'
33088 5' -56.1 NC_007497.1 + 16390 0.66 0.606808
Target:  5'- gCAGCGCGuaUGCGUUCCGacGcCCGUa-- -3'
miRNA:   3'- -GUUGCGCcgAUGCAAGGU--C-GGCGacu -5'
33088 5' -56.1 NC_007497.1 + 8533 0.66 0.584606
Target:  5'- aAAUGCGGCUGaucgUCGGCUGCgGAa -3'
miRNA:   3'- gUUGCGCCGAUgcaaGGUCGGCGaCU- -5'
33088 5' -56.1 NC_007497.1 + 41294 0.66 0.5835
Target:  5'- uGGCGCGGCUcaauucgACGUgcggCCGGaugCGUUGGa -3'
miRNA:   3'- gUUGCGCCGA-------UGCAa---GGUCg--GCGACU- -5'
33088 5' -56.1 NC_007497.1 + 35737 0.66 0.573561
Target:  5'- aCAGCGCGGCUugGcaUCguGCaGCUcGGg -3'
miRNA:   3'- -GUUGCGCCGAugCa-AGguCGgCGA-CU- -5'
33088 5' -56.1 NC_007497.1 + 39866 0.67 0.562566
Target:  5'- gGACGCuGGCUugcuucgcCGacCCAGCCGCUc- -3'
miRNA:   3'- gUUGCG-CCGAu-------GCaaGGUCGGCGAcu -5'
33088 5' -56.1 NC_007497.1 + 26321 0.67 0.540756
Target:  5'- --uCGCGGCUcgGCG-UCCGGCUGUa-- -3'
miRNA:   3'- guuGCGCCGA--UGCaAGGUCGGCGacu -5'
33088 5' -56.1 NC_007497.1 + 29079 0.67 0.529957
Target:  5'- aCAACG-GGCUgACGUUCgcuguguucaaCGGCCGCcGAa -3'
miRNA:   3'- -GUUGCgCCGA-UGCAAG-----------GUCGGCGaCU- -5'
33088 5' -56.1 NC_007497.1 + 40557 0.67 0.519237
Target:  5'- gGGCGCuGGCgaagACGUUgCAGCguCGCUGc -3'
miRNA:   3'- gUUGCG-CCGa---UGCAAgGUCG--GCGACu -5'
33088 5' -56.1 NC_007497.1 + 17091 0.68 0.456946
Target:  5'- gCGGCGCGGcCUGCuugCCAGCCuGCgcaGAa -3'
miRNA:   3'- -GUUGCGCC-GAUGcaaGGUCGG-CGa--CU- -5'
33088 5' -56.1 NC_007497.1 + 35168 0.69 0.427336
Target:  5'- cCAGCGCGGCaGCGcuUUCCuccuuuguuGCCGCg-- -3'
miRNA:   3'- -GUUGCGCCGaUGC--AAGGu--------CGGCGacu -5'
33088 5' -56.1 NC_007497.1 + 17268 0.69 0.398892
Target:  5'- ---gGCGGCUGCGgggCGGCCGCg-- -3'
miRNA:   3'- guugCGCCGAUGCaagGUCGGCGacu -5'
33088 5' -56.1 NC_007497.1 + 6179 0.7 0.35427
Target:  5'- gAGCGCGGUUACGcgcuugucgagaUUCCGucGCCGgaGAa -3'
miRNA:   3'- gUUGCGCCGAUGC------------AAGGU--CGGCgaCU- -5'
33088 5' -56.1 NC_007497.1 + 986 0.71 0.329238
Target:  5'- -uACGCGGCcgACGaUCCgugAGCCaGCUGAu -3'
miRNA:   3'- guUGCGCCGa-UGCaAGG---UCGG-CGACU- -5'
33088 5' -56.1 NC_007497.1 + 26756 0.71 0.32119
Target:  5'- gAugGCGGC-ACGaccgucaCCGGCCGCUGc -3'
miRNA:   3'- gUugCGCCGaUGCaa-----GGUCGGCGACu -5'
33088 5' -56.1 NC_007497.1 + 25052 0.72 0.297932
Target:  5'- gAACGCGGguguaUGCGUUagAGCCGCUGu -3'
miRNA:   3'- gUUGCGCCg----AUGCAAggUCGGCGACu -5'
33088 5' -56.1 NC_007497.1 + 40129 0.72 0.283165
Target:  5'- aAGCGCGGCgACGUgcaGGCCGCgcUGAa -3'
miRNA:   3'- gUUGCGCCGaUGCAaggUCGGCG--ACU- -5'
33088 5' -56.1 NC_007497.1 + 28771 0.74 0.195671
Target:  5'- aCAGCGCGGCUcagGgGgagCCcguGCCGCUGAu -3'
miRNA:   3'- -GUUGCGCCGA---UgCaa-GGu--CGGCGACU- -5'
33088 5' -56.1 NC_007497.1 + 36146 0.76 0.144429
Target:  5'- uCAACGCGG-UGCGUgaugguggUCguGCCGCUGAu -3'
miRNA:   3'- -GUUGCGCCgAUGCA--------AGguCGGCGACU- -5'
33088 5' -56.1 NC_007497.1 + 39903 1.09 0.000625
Target:  5'- cCAACGCGGCUACGUUCCAGCCGCUGAg -3'
miRNA:   3'- -GUUGCGCCGAUGCAAGGUCGGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.