miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33089 5' -59.3 NC_007497.1 + 38226 0.66 0.463211
Target:  5'- cAGGCGCGCcacgGucGC-CGGCGcgaACGUGa -3'
miRNA:   3'- -UCCGCGUGca--CuuCGcGCCGC---UGCAC- -5'
33089 5' -59.3 NC_007497.1 + 26094 0.66 0.463211
Target:  5'- cGGCGaCGCG-GAAGaguaCGCGGgCGACGc- -3'
miRNA:   3'- uCCGC-GUGCaCUUC----GCGCC-GCUGCac -5'
33089 5' -59.3 NC_007497.1 + 32318 0.66 0.462224
Target:  5'- cGGUGCugGUGcuGGCGggcaguuCGGUGGCGa- -3'
miRNA:   3'- uCCGCGugCACu-UCGC-------GCCGCUGCac -5'
33089 5' -59.3 NC_007497.1 + 34406 0.66 0.453392
Target:  5'- gAGGUcgaGCGCcagcgaGUGAAGCaggcgcaaGCGGCGGCGa- -3'
miRNA:   3'- -UCCG---CGUG------CACUUCG--------CGCCGCUGCac -5'
33089 5' -59.3 NC_007497.1 + 27060 0.66 0.443688
Target:  5'- -cGCGCGcCGUGAAGUcgGUGGaCGGCGa- -3'
miRNA:   3'- ucCGCGU-GCACUUCG--CGCC-GCUGCac -5'
33089 5' -59.3 NC_007497.1 + 32892 0.66 0.443688
Target:  5'- cGGCuCACGUuGAGCGCGauUGGCGUGu -3'
miRNA:   3'- uCCGcGUGCAcUUCGCGCc-GCUGCAC- -5'
33089 5' -59.3 NC_007497.1 + 27335 0.66 0.424636
Target:  5'- cGGGUGCACGUcGcAGGCGCaGGCacaucGCGUc -3'
miRNA:   3'- -UCCGCGUGCA-C-UUCGCG-CCGc----UGCAc -5'
33089 5' -59.3 NC_007497.1 + 25762 0.66 0.424636
Target:  5'- cGGGCGCACGUacaucgcugGAaucGGUGuCGGCGuCGa- -3'
miRNA:   3'- -UCCGCGUGCA---------CU---UCGC-GCCGCuGCac -5'
33089 5' -59.3 NC_007497.1 + 36832 0.66 0.424636
Target:  5'- cGGCGgGCGUcGAGC-CGGaCGACGa- -3'
miRNA:   3'- uCCGCgUGCAcUUCGcGCC-GCUGCac -5'
33089 5' -59.3 NC_007497.1 + 2957 0.66 0.415295
Target:  5'- cGGCGCGUGUGGA---CGGCGACGg- -3'
miRNA:   3'- uCCGCGUGCACUUcgcGCCGCUGCac -5'
33089 5' -59.3 NC_007497.1 + 475 0.67 0.396997
Target:  5'- uGGCGCGC-UGGcaagagcagcAGUGCGGCGcGCGg- -3'
miRNA:   3'- uCCGCGUGcACU----------UCGCGCCGC-UGCac -5'
33089 5' -59.3 NC_007497.1 + 26598 0.67 0.388045
Target:  5'- gGGGCGCuacgucgcGCGUGu-GCGCGcGCaGaACGUGa -3'
miRNA:   3'- -UCCGCG--------UGCACuuCGCGC-CG-C-UGCAC- -5'
33089 5' -59.3 NC_007497.1 + 1420 0.67 0.388045
Target:  5'- uGGCGCAgCGUccGAuuGCGCGGCcACGg- -3'
miRNA:   3'- uCCGCGU-GCA--CUu-CGCGCCGcUGCac -5'
33089 5' -59.3 NC_007497.1 + 41123 0.67 0.370543
Target:  5'- cGGCGCGCGcGAAGUcaCGGUGAaCGUc -3'
miRNA:   3'- uCCGCGUGCaCUUCGc-GCCGCU-GCAc -5'
33089 5' -59.3 NC_007497.1 + 40194 0.67 0.370543
Target:  5'- uGGGCGCgaacgGCGUGAAGCcGCuGCG-CGa- -3'
miRNA:   3'- -UCCGCG-----UGCACUUCG-CGcCGCuGCac -5'
33089 5' -59.3 NC_007497.1 + 13130 0.68 0.335578
Target:  5'- -cGCGCACGcgccagcuuugcGAAGCGCaGCGAgCGUGa -3'
miRNA:   3'- ucCGCGUGCa-----------CUUCGCGcCGCU-GCAC- -5'
33089 5' -59.3 NC_007497.1 + 34724 0.68 0.319796
Target:  5'- cAGGCGCGCGagcgcgccgaacGAGGCGCcaccGCGGCGa- -3'
miRNA:   3'- -UCCGCGUGCa-----------CUUCGCGc---CGCUGCac -5'
33089 5' -59.3 NC_007497.1 + 23861 0.68 0.319022
Target:  5'- aGGcGCGCgcggcacucauccgGCGUGAAGCGCuGGcCGGCGc- -3'
miRNA:   3'- -UC-CGCG--------------UGCACUUCGCG-CC-GCUGCac -5'
33089 5' -59.3 NC_007497.1 + 6188 0.69 0.29136
Target:  5'- uGGGCGCGCG---AGCGCGGUuACGc- -3'
miRNA:   3'- -UCCGCGUGCacuUCGCGCCGcUGCac -5'
33089 5' -59.3 NC_007497.1 + 3583 0.69 0.277207
Target:  5'- -cGCGCGCGUGAAGgugaagguCGCGGCGGa--- -3'
miRNA:   3'- ucCGCGUGCACUUC--------GCGCCGCUgcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.