miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33090 3' -53.4 NC_007497.1 + 32064 0.66 0.731948
Target:  5'- --uGGCGauacgacgCUGCGugUgcgCAAGGCCGg -3'
miRNA:   3'- cuuCCGCaa------GGUGCugAa--GUUCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 21480 0.67 0.721025
Target:  5'- cGAAGaGCaGcgCCGCGAgaUCGAGGCUc -3'
miRNA:   3'- -CUUC-CG-CaaGGUGCUgaAGUUCCGGc -5'
33090 3' -53.4 NC_007497.1 + 15261 0.67 0.710009
Target:  5'- -cGGGCGaUCCACu-CUUCGAgGGUCGu -3'
miRNA:   3'- cuUCCGCaAGGUGcuGAAGUU-CCGGC- -5'
33090 3' -53.4 NC_007497.1 + 3804 0.67 0.687746
Target:  5'- -cAGGCGcUCgGuCGACUg-AAGGCCGg -3'
miRNA:   3'- cuUCCGCaAGgU-GCUGAagUUCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 32495 0.68 0.653956
Target:  5'- --cGGCGgcggCCGCGACgcCAuccgacAGGCCGc -3'
miRNA:   3'- cuuCCGCaa--GGUGCUGaaGU------UCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 43134 0.68 0.619972
Target:  5'- --cGGCGcUUCACGAUUUCGagaAGGCgGg -3'
miRNA:   3'- cuuCCGCaAGGUGCUGAAGU---UCCGgC- -5'
33090 3' -53.4 NC_007497.1 + 39118 0.69 0.549247
Target:  5'- aAAGGCGUgaagaacggcgaaaUCUAccCGACcgaaUUCGAGGCCGg -3'
miRNA:   3'- cUUCCGCA--------------AGGU--GCUG----AAGUUCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 22918 0.7 0.530544
Target:  5'- ---aGCGggCCcCGACgagUCAGGGCCGc -3'
miRNA:   3'- cuucCGCaaGGuGCUGa--AGUUCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 44542 0.73 0.373523
Target:  5'- cGAAGGCGUUCCugaucgcagcgaugaACGACUcUCGuacGGaGCCGa -3'
miRNA:   3'- -CUUCCGCAAGG---------------UGCUGA-AGU---UC-CGGC- -5'
33090 3' -53.4 NC_007497.1 + 27603 0.75 0.287838
Target:  5'- cGAGcGUGUUCCGCGGCaUCGccuacuggGGGCCGg -3'
miRNA:   3'- cUUC-CGCAAGGUGCUGaAGU--------UCCGGC- -5'
33090 3' -53.4 NC_007497.1 + 40362 1.1 0.001068
Target:  5'- aGAAGGCGUUCCACGACUUCAAGGCCGa -3'
miRNA:   3'- -CUUCCGCAAGGUGCUGAAGUUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.