miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33090 5' -60.1 NC_007497.1 + 38898 0.66 0.415295
Target:  5'- uGUuGCUCGACGCCGcGAcacagucGGCGGcGa -3'
miRNA:   3'- uCGuCGAGCUGCGGCaCUu------CCGCC-Ca -5'
33090 5' -60.1 NC_007497.1 + 39470 0.66 0.406082
Target:  5'- gGGCAGCcggCGACGCU-----GGCGGGc -3'
miRNA:   3'- -UCGUCGa--GCUGCGGcacuuCCGCCCa -5'
33090 5' -60.1 NC_007497.1 + 4175 0.66 0.388045
Target:  5'- uGCGGUgcgCGACGCgCGggccgGAAGGaaCGGGa -3'
miRNA:   3'- uCGUCGa--GCUGCG-GCa----CUUCC--GCCCa -5'
33090 5' -60.1 NC_007497.1 + 28560 0.66 0.388045
Target:  5'- aAGguGCUCGACaucauCgGUGAAGGCccgaucguGGGg -3'
miRNA:   3'- -UCguCGAGCUGc----GgCACUUCCG--------CCCa -5'
33090 5' -60.1 NC_007497.1 + 30404 0.67 0.345318
Target:  5'- aAGUAuCUCGACGCgGUGAAuuucccGGaCGGGa -3'
miRNA:   3'- -UCGUcGAGCUGCGgCACUU------CC-GCCCa -5'
33090 5' -60.1 NC_007497.1 + 16844 0.68 0.313641
Target:  5'- gGGCuGCUCGucCGCCGgcgcGGGuGCGGGg -3'
miRNA:   3'- -UCGuCGAGCu-GCGGCac--UUC-CGCCCa -5'
33090 5' -60.1 NC_007497.1 + 21838 0.68 0.313641
Target:  5'- gGGCuGCcgaugcuuccucUCGACGCC-UGAuacucucgccuAGGCGGGUc -3'
miRNA:   3'- -UCGuCG------------AGCUGCGGcACU-----------UCCGCCCA- -5'
33090 5' -60.1 NC_007497.1 + 4012 0.68 0.29136
Target:  5'- uGCGGgUCGACGCCGgcacGAAGaacguCGGGa -3'
miRNA:   3'- uCGUCgAGCUGCGGCa---CUUCc----GCCCa -5'
33090 5' -60.1 NC_007497.1 + 3762 0.69 0.250554
Target:  5'- gAGCAGCgCuACGCCGaccaucUGGAGGCGcGGa -3'
miRNA:   3'- -UCGUCGaGcUGCGGC------ACUUCCGC-CCa -5'
33090 5' -60.1 NC_007497.1 + 41823 0.7 0.220251
Target:  5'- cGGUAGCUgGAUGCUGuUGGAGGaaGGUg -3'
miRNA:   3'- -UCGUCGAgCUGCGGC-ACUUCCgcCCA- -5'
33090 5' -60.1 NC_007497.1 + 25651 0.7 0.203074
Target:  5'- cGGCGGCUCGAugaucgugccauuCGuuGUGcAGGGCGGu- -3'
miRNA:   3'- -UCGUCGAGCU-------------GCggCAC-UUCCGCCca -5'
33090 5' -60.1 NC_007497.1 + 38355 0.72 0.160101
Target:  5'- cGCAGaaagggaaguCUCGACuuGCCgGUGAAGGUGGGg -3'
miRNA:   3'- uCGUC----------GAGCUG--CGG-CACUUCCGCCCa -5'
33090 5' -60.1 NC_007497.1 + 3545 0.75 0.097393
Target:  5'- cGguGCgcuUUGugGCCGUGAAGGCGGc- -3'
miRNA:   3'- uCguCG---AGCugCGGCACUUCCGCCca -5'
33090 5' -60.1 NC_007497.1 + 40327 1.06 0.000395
Target:  5'- aAGCAGCUCGACGCCGUGAAGGCGGGUc -3'
miRNA:   3'- -UCGUCGAGCUGCGGCACUUCCGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.