miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33091 3' -62.8 NC_007497.1 + 4043 0.66 0.315605
Target:  5'- cGGCCGCcGCGucccCGAacCGCUCGCGuaCCGc -3'
miRNA:   3'- -CCGGCGaCGUc---GCU--GCGAGCGC--GGCa -5'
33091 3' -62.8 NC_007497.1 + 32550 0.66 0.313358
Target:  5'- cGGCCGCcgccgGCGGCaACGCguacggguuccaucUUGCGaCCGg -3'
miRNA:   3'- -CCGGCGa----CGUCGcUGCG--------------AGCGC-GGCa -5'
33091 3' -62.8 NC_007497.1 + 35662 0.66 0.308165
Target:  5'- uGCCcgaGCUGCA-CGAUGCcaagcCGCGCUGUg -3'
miRNA:   3'- cCGG---CGACGUcGCUGCGa----GCGCGGCA- -5'
33091 3' -62.8 NC_007497.1 + 32489 0.66 0.308165
Target:  5'- uGCCGCcgGCGGCGGC-CgCGaCGCCa- -3'
miRNA:   3'- cCGGCGa-CGUCGCUGcGaGC-GCGGca -5'
33091 3' -62.8 NC_007497.1 + 15077 0.66 0.308165
Target:  5'- gGGCCGCgaugcccaccugUGCuuuGCGuugaacCGCguggCGCGCCGc -3'
miRNA:   3'- -CCGGCG------------ACGu--CGCu-----GCGa---GCGCGGCa -5'
33091 3' -62.8 NC_007497.1 + 34902 0.66 0.300859
Target:  5'- cGGCCGC-GCagGGCGA-GCUCgaGCGuCCGa -3'
miRNA:   3'- -CCGGCGaCG--UCGCUgCGAG--CGC-GGCa -5'
33091 3' -62.8 NC_007497.1 + 40137 0.66 0.300859
Target:  5'- cGCaCGUgaagcGCGGCGACGUgcaggcCGCGCUGa -3'
miRNA:   3'- cCG-GCGa----CGUCGCUGCGa-----GCGCGGCa -5'
33091 3' -62.8 NC_007497.1 + 41610 0.66 0.293689
Target:  5'- uGCCGCUGCccca--GCUCGUGUCGUc -3'
miRNA:   3'- cCGGCGACGucgcugCGAGCGCGGCA- -5'
33091 3' -62.8 NC_007497.1 + 41599 0.66 0.293689
Target:  5'- cGUgGgaGCaAGCGGCgGCUCGUGCCu- -3'
miRNA:   3'- cCGgCgaCG-UCGCUG-CGAGCGCGGca -5'
33091 3' -62.8 NC_007497.1 + 16342 0.66 0.292979
Target:  5'- cGCCGCUGUugaacggAGCG-CGC-CG-GCCGUc -3'
miRNA:   3'- cCGGCGACG-------UCGCuGCGaGCgCGGCA- -5'
33091 3' -62.8 NC_007497.1 + 36025 0.66 0.292979
Target:  5'- aGCCGCgGCcGCGGCGUUCGgcauccaucagcuCGUCGa -3'
miRNA:   3'- cCGGCGaCGuCGCUGCGAGC-------------GCGGCa -5'
33091 3' -62.8 NC_007497.1 + 36530 0.66 0.292979
Target:  5'- uGG-CGCUGCGGCucggcagGACGCUUGCcgaGCUGc -3'
miRNA:   3'- -CCgGCGACGUCG-------CUGCGAGCG---CGGCa -5'
33091 3' -62.8 NC_007497.1 + 30072 0.66 0.291563
Target:  5'- -cCCGCUGCcuuacGGCGgcuuuuugugcgacACGCUCGCauaGCCGa -3'
miRNA:   3'- ccGGCGACG-----UCGC--------------UGCGAGCG---CGGCa -5'
33091 3' -62.8 NC_007497.1 + 1489 0.66 0.286652
Target:  5'- uGGCCGC-GCAaucgGACGCU-GCGCCa- -3'
miRNA:   3'- -CCGGCGaCGUcg--CUGCGAgCGCGGca -5'
33091 3' -62.8 NC_007497.1 + 6813 0.66 0.286651
Target:  5'- gGGCCGCUcuucGCcGCGAgugauUGCgaaCGCGCCa- -3'
miRNA:   3'- -CCGGCGA----CGuCGCU-----GCGa--GCGCGGca -5'
33091 3' -62.8 NC_007497.1 + 10805 0.66 0.279748
Target:  5'- aGGCagagGCaGCGGUGGCGaauCUCGgGCCGa -3'
miRNA:   3'- -CCGg---CGaCGUCGCUGC---GAGCgCGGCa -5'
33091 3' -62.8 NC_007497.1 + 23013 0.67 0.272978
Target:  5'- uGGCCGCaugcggggGCGGCGACGacaGCgGCCc- -3'
miRNA:   3'- -CCGGCGa-------CGUCGCUGCgagCG-CGGca -5'
33091 3' -62.8 NC_007497.1 + 29437 0.67 0.272978
Target:  5'- cGGCCGCgac-GUGGCGCUCGaaCCGg -3'
miRNA:   3'- -CCGGCGacguCGCUGCGAGCgcGGCa -5'
33091 3' -62.8 NC_007497.1 + 28098 0.67 0.272978
Target:  5'- uGGCUGgUGCGcguGCGGCGCaUUaCGCCGa -3'
miRNA:   3'- -CCGGCgACGU---CGCUGCG-AGcGCGGCa -5'
33091 3' -62.8 NC_007497.1 + 41163 0.67 0.272978
Target:  5'- cGCCGCcGCAucGuCGGCGUUCGcCGCCc- -3'
miRNA:   3'- cCGGCGaCGU--C-GCUGCGAGC-GCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.