miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33091 5' -48.5 NC_007497.1 + 27186 0.66 0.950363
Target:  5'- ---aGGCGGGGCg----GCGCAucgGCGGc -3'
miRNA:   3'- guuaCCGUUUCGacauaCGCGU---UGCC- -5'
33091 5' -48.5 NC_007497.1 + 29282 0.66 0.950363
Target:  5'- -uGUGGCGcgacAGCUGUAccacggugcUGCGCuacGugGGa -3'
miRNA:   3'- guUACCGUu---UCGACAU---------ACGCG---UugCC- -5'
33091 5' -48.5 NC_007497.1 + 26023 0.67 0.915994
Target:  5'- cCGAgGGCGAcauGGCUGU-UGCGCAAaaGGu -3'
miRNA:   3'- -GUUaCCGUU---UCGACAuACGCGUUg-CC- -5'
33091 5' -48.5 NC_007497.1 + 23582 0.67 0.909156
Target:  5'- uGGUcGCGcuGCUGg--GCGCGGCGGc -3'
miRNA:   3'- gUUAcCGUuuCGACauaCGCGUUGCC- -5'
33091 5' -48.5 NC_007497.1 + 34873 0.68 0.894542
Target:  5'- ---aGGCGucGCUGgcguugGCGCAGCa- -3'
miRNA:   3'- guuaCCGUuuCGACaua---CGCGUUGcc -5'
33091 5' -48.5 NC_007497.1 + 26661 0.68 0.886775
Target:  5'- ---cGGCGAcugggucGCUGU-UGCGCAgACGGg -3'
miRNA:   3'- guuaCCGUUu------CGACAuACGCGU-UGCC- -5'
33091 5' -48.5 NC_007497.1 + 19316 0.68 0.870348
Target:  5'- ---cGGUcggAAAGCaacucaccgcaGUAUGCGCAGCGGc -3'
miRNA:   3'- guuaCCG---UUUCGa----------CAUACGCGUUGCC- -5'
33091 5' -48.5 NC_007497.1 + 28102 0.69 0.861704
Target:  5'- ---cGGCu-GGCUG-GUGCGCGuGCGGc -3'
miRNA:   3'- guuaCCGuuUCGACaUACGCGU-UGCC- -5'
33091 5' -48.5 NC_007497.1 + 17687 0.69 0.852784
Target:  5'- ---cGGCGcGAGCUcaucGCGCGACGGa -3'
miRNA:   3'- guuaCCGU-UUCGAcauaCGCGUUGCC- -5'
33091 5' -48.5 NC_007497.1 + 13066 0.7 0.81455
Target:  5'- ----cGCAAAGCUGgcgcGUGCGCGGCc- -3'
miRNA:   3'- guuacCGUUUCGACa---UACGCGUUGcc -5'
33091 5' -48.5 NC_007497.1 + 4186 0.7 0.794062
Target:  5'- ---cGGUuuauGGCUGcgGUGCGCGACGc -3'
miRNA:   3'- guuaCCGuu--UCGACa-UACGCGUUGCc -5'
33091 5' -48.5 NC_007497.1 + 25408 0.7 0.78352
Target:  5'- ---cGGCAu-GCUGcgcGUGCGUAugGGg -3'
miRNA:   3'- guuaCCGUuuCGACa--UACGCGUugCC- -5'
33091 5' -48.5 NC_007497.1 + 30743 0.7 0.782455
Target:  5'- --uUGGCGAuacguuauuAGgaGUGUGCGCAgauggcuauuuccGCGGa -3'
miRNA:   3'- guuACCGUU---------UCgaCAUACGCGU-------------UGCC- -5'
33091 5' -48.5 NC_007497.1 + 44658 0.71 0.739679
Target:  5'- cCGAUGcugucGCGGGGCUGUAgccUGCcGCGAUGGc -3'
miRNA:   3'- -GUUAC-----CGUUUCGACAU---ACG-CGUUGCC- -5'
33091 5' -48.5 NC_007497.1 + 35859 0.72 0.705438
Target:  5'- ---cGGCGGAGCUGUAU---CAGCGGa -3'
miRNA:   3'- guuaCCGUUUCGACAUAcgcGUUGCC- -5'
33091 5' -48.5 NC_007497.1 + 10578 0.72 0.700808
Target:  5'- uGAUGGCuuGGCUGUcccuuucacgcuuUGCGCGACu- -3'
miRNA:   3'- gUUACCGuuUCGACAu------------ACGCGUUGcc -5'
33091 5' -48.5 NC_007497.1 + 39955 0.73 0.6469
Target:  5'- ---cGGCAGAGCUG---GCGCAuCGGc -3'
miRNA:   3'- guuaCCGUUUCGACauaCGCGUuGCC- -5'
33091 5' -48.5 NC_007497.1 + 32068 0.75 0.518707
Target:  5'- uCGGUGGCGAuacgacGCUgcGUGUGCGCAAggcCGGg -3'
miRNA:   3'- -GUUACCGUUu-----CGA--CAUACGCGUU---GCC- -5'
33091 5' -48.5 NC_007497.1 + 40850 1.12 0.002119
Target:  5'- gCAAUGGCAAAGCUGUAUGCGCAACGGg -3'
miRNA:   3'- -GUUACCGUUUCGACAUACGCGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.