miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 3' -45.8 NC_007497.1 + 32073 0.66 0.993957
Target:  5'- gGGGuUCGGUGGCGAUacgacgcUgcgugugcgcaaggcCGGGUUCGGCGa -3'
miRNA:   3'- -CCC-AGUCGCCGUUA-------A---------------GUUUAAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 24412 0.66 0.991276
Target:  5'- cGGGUUucGUGaGCAGUUCcauucgAGAUUCAugGu -3'
miRNA:   3'- -CCCAGu-CGC-CGUUAAG------UUUAAGUugC- -5'
33092 3' -45.8 NC_007497.1 + 36127 0.66 0.991276
Target:  5'- uGGUCGugccgcugauGCGGCAuuugcgUCGAAUgCGGCGa -3'
miRNA:   3'- cCCAGU----------CGCCGUua----AGUUUAaGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 36706 0.66 0.991276
Target:  5'- aGGG---GUGGCGucgCGAAUUCGGCGa -3'
miRNA:   3'- -CCCaguCGCCGUuaaGUUUAAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 23442 0.67 0.989852
Target:  5'- uGGGccugagCGGCGGCcgccUUCAug-UCGGCGa -3'
miRNA:   3'- -CCCa-----GUCGCCGuu--AAGUuuaAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 36941 0.67 0.988251
Target:  5'- gGGGU-GGCGGCA---CGAAUUCAugcCGa -3'
miRNA:   3'- -CCCAgUCGCCGUuaaGUUUAAGUu--GC- -5'
33092 3' -45.8 NC_007497.1 + 42876 0.67 0.98447
Target:  5'- cGGcGUCGG-GGCAGcgaUCGAAggCGACGa -3'
miRNA:   3'- -CC-CAGUCgCCGUUa--AGUUUaaGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 26869 0.67 0.983614
Target:  5'- cGGG-CAaguacGCGGCGAUcgacgacggcgcgCAGAUUCAGCa -3'
miRNA:   3'- -CCCaGU-----CGCCGUUAa------------GUUUAAGUUGc -5'
33092 3' -45.8 NC_007497.1 + 30638 0.68 0.967571
Target:  5'- --aUCGGCGGCGAUgugcugCGuuUUCAugGg -3'
miRNA:   3'- cccAGUCGCCGUUAa-----GUuuAAGUugC- -5'
33092 3' -45.8 NC_007497.1 + 30310 0.69 0.963823
Target:  5'- cGGGUCcGCGGUcgGAUUCccguccgggAAAUUCAccGCGu -3'
miRNA:   3'- -CCCAGuCGCCG--UUAAG---------UUUAAGU--UGC- -5'
33092 3' -45.8 NC_007497.1 + 39934 0.69 0.959782
Target:  5'- uGGGUCGGCGaaGCAAgcCAGcgUCcGCa -3'
miRNA:   3'- -CCCAGUCGC--CGUUaaGUUuaAGuUGc -5'
33092 3' -45.8 NC_007497.1 + 4584 0.69 0.958082
Target:  5'- cGGUCGuGCGGCAccuacaacagcgUCGuuUUCGACGa -3'
miRNA:   3'- cCCAGU-CGCCGUua----------AGUuuAAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 15175 0.69 0.950791
Target:  5'- cGGG-UAGCGGCGcgcCAcgcGGUUCAACGc -3'
miRNA:   3'- -CCCaGUCGCCGUuaaGU---UUAAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 41666 0.7 0.945829
Target:  5'- uGGGgCAGCGGCA--UCGAA--CAGCu -3'
miRNA:   3'- -CCCaGUCGCCGUuaAGUUUaaGUUGc -5'
33092 3' -45.8 NC_007497.1 + 3090 0.7 0.940549
Target:  5'- cGGUUucgaaGGCGGCAAUUCugAAAgcgcUCGGCGa -3'
miRNA:   3'- cCCAG-----UCGCCGUUAAG--UUUa---AGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 37124 0.7 0.929022
Target:  5'- uGGUCGGCGGCcg-UCGacggcaucgugAcgUCGACGu -3'
miRNA:   3'- cCCAGUCGCCGuuaAGU-----------UuaAGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 14937 0.72 0.852343
Target:  5'- -cGUCGGCGGCGAcgauUUCGAGauUUCGGCc -3'
miRNA:   3'- ccCAGUCGCCGUU----AAGUUU--AAGUUGc -5'
33092 3' -45.8 NC_007497.1 + 38782 0.73 0.833501
Target:  5'- uGGUUAauGCGGCAAUUCGGg--CGGCGa -3'
miRNA:   3'- cCCAGU--CGCCGUUAAGUUuaaGUUGC- -5'
33092 3' -45.8 NC_007497.1 + 37079 0.73 0.833501
Target:  5'- cGGGUCAGCGGCGcgccgaagcuuGUUCcgccucCGGCGc -3'
miRNA:   3'- -CCCAGUCGCCGU-----------UAAGuuuaa-GUUGC- -5'
33092 3' -45.8 NC_007497.1 + 41554 1.14 0.004165
Target:  5'- uGGGUCAGCGGCAAUUCAAAUUCAACGa -3'
miRNA:   3'- -CCCAGUCGCCGUUAAGUUUAAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.