miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33092 5' -56.9 NC_007497.1 + 37414 0.67 0.508487
Target:  5'- uUGCGCcuuGGUGCGCUugcucuucuCGGCCAuaAGCCc -3'
miRNA:   3'- -ACGCG---CCGUGCGAcuu------GCUGGU--UCGG- -5'
33092 5' -56.9 NC_007497.1 + 30159 0.67 0.508487
Target:  5'- aGCGCcacuGGCACGUgccGACGAUCuGGCg -3'
miRNA:   3'- aCGCG----CCGUGCGac-UUGCUGGuUCGg -5'
33092 5' -56.9 NC_007497.1 + 16732 0.67 0.508487
Target:  5'- cGCgaGCGGCGCGCUcc-CGGCguAGCg -3'
miRNA:   3'- aCG--CGCCGUGCGAcuuGCUGguUCGg -5'
33092 5' -56.9 NC_007497.1 + 1416 0.67 0.508487
Target:  5'- gGCGUGGCGCaGCguccGAuugcGCGGCCAcggaaaGGCg -3'
miRNA:   3'- aCGCGCCGUG-CGa---CU----UGCUGGU------UCGg -5'
33092 5' -56.9 NC_007497.1 + 29346 0.67 0.508487
Target:  5'- gGCGaCGGCAUGUucgcgcaucacaUGuACGGCCGccuguccggaaaGGCCg -3'
miRNA:   3'- aCGC-GCCGUGCG------------ACuUGCUGGU------------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 36160 0.67 0.498029
Target:  5'- -uCGCGGUaACGCUGA-CGAUCA-GCUc -3'
miRNA:   3'- acGCGCCG-UGCGACUuGCUGGUuCGG- -5'
33092 5' -56.9 NC_007497.1 + 2063 0.67 0.498029
Target:  5'- aUGCGUGaCACGCUGcGCaGCCGGGgaCCg -3'
miRNA:   3'- -ACGCGCcGUGCGACuUGcUGGUUC--GG- -5'
33092 5' -56.9 NC_007497.1 + 20833 0.67 0.498029
Target:  5'- cGCGCucgGGCACauGCUcGAACuucccaugcucGCCAAGCCg -3'
miRNA:   3'- aCGCG---CCGUG--CGA-CUUGc----------UGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 28112 0.67 0.498029
Target:  5'- gUGCGaaaucCGGCugGCUGGugcGCGugCGGcgcauuacGCCg -3'
miRNA:   3'- -ACGC-----GCCGugCGACU---UGCugGUU--------CGG- -5'
33092 5' -56.9 NC_007497.1 + 10655 0.67 0.487669
Target:  5'- cGCGCaaaGCGUgaaagGGACaGCCAAGCCa -3'
miRNA:   3'- aCGCGccgUGCGa----CUUGcUGGUUCGG- -5'
33092 5' -56.9 NC_007497.1 + 949 0.67 0.487669
Target:  5'- cGCGCGccGUACGCgGuAAUGGCUgAAGCCc -3'
miRNA:   3'- aCGCGC--CGUGCGaC-UUGCUGG-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 12272 0.67 0.487669
Target:  5'- aGCGCGGauugcCGCUcGGACGAuuccgaaaaacCCGAuGCCa -3'
miRNA:   3'- aCGCGCCgu---GCGA-CUUGCU-----------GGUU-CGG- -5'
33092 5' -56.9 NC_007497.1 + 15276 0.67 0.477412
Target:  5'- cGCGaGGCGCGCauccagUGGAuCGACUggaugcucgacGAGCCg -3'
miRNA:   3'- aCGCgCCGUGCG------ACUU-GCUGG-----------UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 11669 0.67 0.477412
Target:  5'- cGCGCGGCcCGgaaccgGcACGGCCGggaguAGCCg -3'
miRNA:   3'- aCGCGCCGuGCga----CuUGCUGGU-----UCGG- -5'
33092 5' -56.9 NC_007497.1 + 14279 0.67 0.477412
Target:  5'- aUGCGUGGCA-GCUGGcgcaugcacuGCGucGCCAgcgagcGGCCc -3'
miRNA:   3'- -ACGCGCCGUgCGACU----------UGC--UGGU------UCGG- -5'
33092 5' -56.9 NC_007497.1 + 3269 0.67 0.477412
Target:  5'- cGCGCuGGUuaucGCGgaGAcCGGCCcGGGCCu -3'
miRNA:   3'- aCGCG-CCG----UGCgaCUuGCUGG-UUCGG- -5'
33092 5' -56.9 NC_007497.1 + 4124 0.67 0.475373
Target:  5'- cGCgGCGGUACGCgagcgguucgggGAcgcgGCGGCCGAGaCg -3'
miRNA:   3'- aCG-CGCCGUGCGa-----------CU----UGCUGGUUCgG- -5'
33092 5' -56.9 NC_007497.1 + 15819 0.67 0.474355
Target:  5'- cGCaGCGGCcuucaugcuacccaACGCUGccauauGCGAgCCGAGCa -3'
miRNA:   3'- aCG-CGCCG--------------UGCGACu-----UGCU-GGUUCGg -5'
33092 5' -56.9 NC_007497.1 + 3399 0.68 0.467262
Target:  5'- aGCGCcGCACGCcGAugGAC--GGCg -3'
miRNA:   3'- aCGCGcCGUGCGaCUugCUGguUCGg -5'
33092 5' -56.9 NC_007497.1 + 22926 0.68 0.467262
Target:  5'- cGuCGCaGCGCGCgcGAACGAUgGcGCCg -3'
miRNA:   3'- aC-GCGcCGUGCGa-CUUGCUGgUuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.