miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33093 3' -54.8 NC_007497.1 + 43248 0.66 0.699155
Target:  5'- uUCgAUCAGGUCGAGaAGcGUCaCGCGCu -3'
miRNA:   3'- uAG-UGGUCUAGCUUcUC-CAGcGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 10483 0.66 0.688087
Target:  5'- -gCGCCGaacUGAAguuuGAGGUCGCGUGCc -3'
miRNA:   3'- uaGUGGUcuaGCUU----CUCCAGCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 33134 0.66 0.688087
Target:  5'- cGUC-CgAGcGUCagcGAGAGGUCGCGCGa -3'
miRNA:   3'- -UAGuGgUC-UAGc--UUCUCCAGCGCGCg -5'
33093 3' -54.8 NC_007497.1 + 38858 0.66 0.688087
Target:  5'- aAUCGCCAGGucuUCGAgacGGAGGaUGCGaugaccacCGCg -3'
miRNA:   3'- -UAGUGGUCU---AGCU---UCUCCaGCGC--------GCG- -5'
33093 3' -54.8 NC_007497.1 + 23495 0.66 0.665794
Target:  5'- cUCAggcCCAGG-CGAAGGcGGUagaugcUGCGCGCg -3'
miRNA:   3'- uAGU---GGUCUaGCUUCU-CCA------GCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 34080 0.66 0.654592
Target:  5'- --gGCCGcGGcCGAcAGGGG-CGCGCGCa -3'
miRNA:   3'- uagUGGU-CUaGCU-UCUCCaGCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 27754 0.66 0.643369
Target:  5'- -gCAUCGauGAUCGAcaaguGGGGGcuguacgaaaUCGCGCGCu -3'
miRNA:   3'- uaGUGGU--CUAGCU-----UCUCC----------AGCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 35934 0.68 0.565081
Target:  5'- --gAUCAGGUCGAuuuuGcGGUCGCGCa- -3'
miRNA:   3'- uagUGGUCUAGCUu---CuCCAGCGCGcg -5'
33093 3' -54.8 NC_007497.1 + 6209 0.68 0.543086
Target:  5'- gAUgACCGGAUUuuGGAGGcguggGCGCGCg -3'
miRNA:   3'- -UAgUGGUCUAGcuUCUCCag---CGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 33838 0.68 0.532193
Target:  5'- --gGCCGGGUUGAuugcGGGG-CGCGCGg -3'
miRNA:   3'- uagUGGUCUAGCUu---CUCCaGCGCGCg -5'
33093 3' -54.8 NC_007497.1 + 33708 0.68 0.532193
Target:  5'- aAUCAgCAGAU---GGAGGUCGCGaagcaGCu -3'
miRNA:   3'- -UAGUgGUCUAgcuUCUCCAGCGCg----CG- -5'
33093 3' -54.8 NC_007497.1 + 1257 0.69 0.467711
Target:  5'- aAUCGCuCGGAUCGggGAugggccucgucggGGUCGaugGUGCu -3'
miRNA:   3'- -UAGUG-GUCUAGCuuCU-------------CCAGCg--CGCG- -5'
33093 3' -54.8 NC_007497.1 + 1076 0.7 0.428655
Target:  5'- -aCGgCAGGUCacGAGGGGcagCGCGCGCg -3'
miRNA:   3'- uaGUgGUCUAGc-UUCUCCa--GCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 35157 0.72 0.329705
Target:  5'- -aCGCaCAGG-CGGcGGAGGUCGCgGCGCa -3'
miRNA:   3'- uaGUG-GUCUaGCU-UCUCCAGCG-CGCG- -5'
33093 3' -54.8 NC_007497.1 + 28725 0.74 0.262062
Target:  5'- gAUCACCGGuUCGA--AGGUCGCGaGCu -3'
miRNA:   3'- -UAGUGGUCuAGCUucUCCAGCGCgCG- -5'
33093 3' -54.8 NC_007497.1 + 27393 0.75 0.235817
Target:  5'- --uGCCGGA-CGAAGAcgGGaUCGCGCGCu -3'
miRNA:   3'- uagUGGUCUaGCUUCU--CC-AGCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 38214 0.78 0.139362
Target:  5'- gGUCGCCGGcgCGAAcgugauccgggacGAGG-CGCGCGCu -3'
miRNA:   3'- -UAGUGGUCuaGCUU-------------CUCCaGCGCGCG- -5'
33093 3' -54.8 NC_007497.1 + 41738 1.1 0.000655
Target:  5'- aAUCACCAGAUCGAAGAGGUCGCGCGCa -3'
miRNA:   3'- -UAGUGGUCUAGCUUCUCCAGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.