miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33094 5' -54.6 NC_007497.1 + 36055 0.66 0.683948
Target:  5'- uGCGCGCgGGucGCUUCgcggAUACGcggaagccgcGGCCg -3'
miRNA:   3'- uCGCGCGaCC--CGAAGa---UAUGUu---------CCGG- -5'
33094 5' -54.6 NC_007497.1 + 34873 0.66 0.682824
Target:  5'- aGGCGuCGCUGGcguuggcgcagcaGCgacgcgUCgcGUugGAGGCCg -3'
miRNA:   3'- -UCGC-GCGACC-------------CGa-----AGa-UAugUUCCGG- -5'
33094 5' -54.6 NC_007497.1 + 7986 0.67 0.62738
Target:  5'- gAGCGgGUUGGGUUgua----GAGGCCc -3'
miRNA:   3'- -UCGCgCGACCCGAagauaugUUCCGG- -5'
33094 5' -54.6 NC_007497.1 + 29179 0.67 0.613769
Target:  5'- gGGCGCGUgcaucGGCUggCUGUuucgucgacagcCGAGGCCg -3'
miRNA:   3'- -UCGCGCGac---CCGAa-GAUAu-----------GUUCCGG- -5'
33094 5' -54.6 NC_007497.1 + 3162 0.67 0.570907
Target:  5'- cAGCGCGCUuuugaugauGCUgaugCUGU-CGAGGCCc -3'
miRNA:   3'- -UCGCGCGAcc-------CGAa---GAUAuGUUCCGG- -5'
33094 5' -54.6 NC_007497.1 + 1655 0.68 0.559735
Target:  5'- gAGCGCuGCUGcauGCgUUCUGUACGGGGa- -3'
miRNA:   3'- -UCGCG-CGACc--CG-AAGAUAUGUUCCgg -5'
33094 5' -54.6 NC_007497.1 + 2443 0.69 0.452616
Target:  5'- uGCGcCGCUGGGCgUUCgcgcgGCGAcGcGCCa -3'
miRNA:   3'- uCGC-GCGACCCG-AAGaua--UGUU-C-CGG- -5'
33094 5' -54.6 NC_007497.1 + 29088 0.72 0.323791
Target:  5'- aGGCGCGCgacaacGGGCUgacguucgCUGUGuuCAAcGGCCg -3'
miRNA:   3'- -UCGCGCGa-----CCCGAa-------GAUAU--GUU-CCGG- -5'
33094 5' -54.6 NC_007497.1 + 23578 0.73 0.284895
Target:  5'- cGCGCuGCUGGGCgcggcgGCGGGcGCCg -3'
miRNA:   3'- uCGCG-CGACCCGaagauaUGUUC-CGG- -5'
33094 5' -54.6 NC_007497.1 + 23639 0.73 0.281948
Target:  5'- gAGCGCGCacugugcgagcggGGGCUgugAUGCugAAGGCCg -3'
miRNA:   3'- -UCGCGCGa------------CCCGAagaUAUG--UUCCGG- -5'
33094 5' -54.6 NC_007497.1 + 9101 0.77 0.165503
Target:  5'- gGGUGCGC-GGGCUgcgGUGCA-GGCCg -3'
miRNA:   3'- -UCGCGCGaCCCGAagaUAUGUuCCGG- -5'
33094 5' -54.6 NC_007497.1 + 43039 1.13 0.000402
Target:  5'- gAGCGCGCUGGGCUUCUAUACAAGGCCg -3'
miRNA:   3'- -UCGCGCGACCCGAAGAUAUGUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.