Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33096 | 5' | -62.2 | NC_007497.1 | + | 1920 | 0.66 | 0.326796 |
Target: 5'- ---aGUUCCGaGauGCACCGgCCGCuGGUa -3' miRNA: 3'- caaaCGAGGC-CgcCGUGGC-GGCG-CCA- -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 2028 | 0.73 | 0.092899 |
Target: 5'- --cUGCUUCGGC-GUACCGgCGCGGUu -3' miRNA: 3'- caaACGAGGCCGcCGUGGCgGCGCCA- -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 2293 | 0.68 | 0.243304 |
Target: 5'- ---gGCUCgaaguaccUGGCGGC-CUGCCGUGGc -3' miRNA: 3'- caaaCGAG--------GCCGCCGuGGCGGCGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 23495 | 0.66 | 0.304091 |
Target: 5'- --gUGCacgacgCCGGCGccCGCCGCCGCGc- -3' miRNA: 3'- caaACGa-----GGCCGCc-GUGGCGGCGCca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 25167 | 0.66 | 0.292485 |
Target: 5'- --cUGCUCCGGCauaaaugcccagaacGGCucACCGCCcgacauaucgGCGGc -3' miRNA: 3'- caaACGAGGCCG---------------CCG--UGGCGG----------CGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 27175 | 0.68 | 0.239634 |
Target: 5'- ---cGCaUCGGCGGCcguauccgcuccgcuGCCGgCGCGGUu -3' miRNA: 3'- caaaCGaGGCCGCCG---------------UGGCgGCGCCA- -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 27519 | 0.67 | 0.282617 |
Target: 5'- ---aGCUcCCGGCccccaguaGGCGauGCCGCGGa -3' miRNA: 3'- caaaCGA-GGCCG--------CCGUggCGGCGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 32487 | 0.69 | 0.192971 |
Target: 5'- -gUUGCcgCCGGCGGCG--GCCGCGa- -3' miRNA: 3'- caAACGa-GGCCGCCGUggCGGCGCca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 33911 | 0.8 | 0.030758 |
Target: 5'- ---cGCUUCGGCGGCcauGCCGCCGCGa- -3' miRNA: 3'- caaaCGAGGCCGCCG---UGGCGGCGCca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 34619 | 0.73 | 0.090352 |
Target: 5'- -gUUGCUgcggccaagCCGGCGGU--CGCCGCGGUg -3' miRNA: 3'- caAACGA---------GGCCGCCGugGCGGCGCCA- -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 34726 | 0.67 | 0.255878 |
Target: 5'- ---gGUUUCaGCGaGCGCCGCCGCGu- -3' miRNA: 3'- caaaCGAGGcCGC-CGUGGCGGCGCca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 36613 | 0.66 | 0.296796 |
Target: 5'- ---aGCU-CGGCGGCcUCGCCGCa-- -3' miRNA: 3'- caaaCGAgGCCGCCGuGGCGGCGcca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 36984 | 0.7 | 0.164694 |
Target: 5'- ---aGCccgCCGGCGGCGCCGgagGCGGa -3' miRNA: 3'- caaaCGa--GGCCGCCGUGGCgg-CGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 37058 | 0.76 | 0.062745 |
Target: 5'- -cUUGUUCCGccucCGGCGCCGCCgGCGGg -3' miRNA: 3'- caAACGAGGCc---GCCGUGGCGG-CGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 39622 | 0.68 | 0.237212 |
Target: 5'- cGggUGCUUcgCGGCauuGGCACCGCCcGCGa- -3' miRNA: 3'- -CaaACGAG--GCCG---CCGUGGCGG-CGCca -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 40519 | 0.67 | 0.255878 |
Target: 5'- ---gGCguuUCCGGCGGUAgCGCC-CGGc -3' miRNA: 3'- caaaCG---AGGCCGCCGUgGCGGcGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 41170 | 0.66 | 0.31909 |
Target: 5'- ---gGCaCCGGCGuCACCGCgaaGCGGa -3' miRNA: 3'- caaaCGaGGCCGCcGUGGCGg--CGCCa -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 42901 | 0.66 | 0.289638 |
Target: 5'- -cUUGUcuUCCGGaaccGCGCUGCCGCGaGUg -3' miRNA: 3'- caAACG--AGGCCgc--CGUGGCGGCGC-CA- -5' |
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33096 | 5' | -62.2 | NC_007497.1 | + | 44386 | 1.06 | 0.000276 |
Target: 5'- gGUUUGCUCCGGCGGCACCGCCGCGGUu -3' miRNA: 3'- -CAAACGAGGCCGCCGUGGCGGCGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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