Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33097 | 3' | -57.1 | NC_007497.1 | + | 13611 | 0.68 | 0.448387 |
Target: 5'- uGAG-GCCACUgaggaagaGCGGGCcgccgcaugGGCCGCCg -3' miRNA: 3'- -CUCgUGGUGAaug-----CGCCCG---------CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 21845 | 0.68 | 0.448387 |
Target: 5'- ---gGCCGCaUGCGgGGGCGGCgACg -3' miRNA: 3'- cucgUGGUGaAUGCgCCCGCUGgUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 11378 | 0.68 | 0.438615 |
Target: 5'- uGGC-CCAUcggACGCGGGCGGgCGgCg -3' miRNA: 3'- cUCGuGGUGaa-UGCGCCCGCUgGUgG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 24512 | 0.68 | 0.428966 |
Target: 5'- uGGCGCUGCguacGCGCGGGauuGCCACg -3' miRNA: 3'- cUCGUGGUGaa--UGCGCCCgc-UGGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 33459 | 0.68 | 0.428966 |
Target: 5'- -cGCGCgACcUGCGCGGcCGACUgcGCCa -3' miRNA: 3'- cuCGUGgUGaAUGCGCCcGCUGG--UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 34686 | 0.69 | 0.410049 |
Target: 5'- cGAuCGCUACUU-CGCGcucGGCGGCCGCg -3' miRNA: 3'- -CUcGUGGUGAAuGCGC---CCGCUGGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 12332 | 0.69 | 0.400788 |
Target: 5'- cGGGUuCCAuCUUGCGaCcGGCGGCCACg -3' miRNA: 3'- -CUCGuGGU-GAAUGC-GcCCGCUGGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 29561 | 0.69 | 0.38267 |
Target: 5'- -uGCGCCACagGCGCGGGgGcuUCACg -3' miRNA: 3'- cuCGUGGUGaaUGCGCCCgCu-GGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 9163 | 0.69 | 0.38267 |
Target: 5'- -cGgGCCAgUUGCGCGGGCagGACCu-- -3' miRNA: 3'- cuCgUGGUgAAUGCGCCCG--CUGGugg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 2523 | 0.69 | 0.373818 |
Target: 5'- cGGUccuGCCACUucugcccgggcgUGCGCGccGGCGGCCGCg -3' miRNA: 3'- cUCG---UGGUGA------------AUGCGC--CCGCUGGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 17734 | 0.69 | 0.373818 |
Target: 5'- aGGCGcCCGCagugGCGcCGGGUGAUCGCUu -3' miRNA: 3'- cUCGU-GGUGaa--UGC-GCCCGCUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 17819 | 0.7 | 0.348105 |
Target: 5'- cGGCGacaCGCUUACGuuGGuCGACCGCUu -3' miRNA: 3'- cUCGUg--GUGAAUGCgcCC-GCUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 3330 | 0.7 | 0.348105 |
Target: 5'- aGGGCGCgCugUUGCGCGGcacgcugaaCGACCaaGCCg -3' miRNA: 3'- -CUCGUG-GugAAUGCGCCc--------GCUGG--UGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 29374 | 0.7 | 0.33982 |
Target: 5'- cGAGCGCCACgu-CGCGGcCGACguCg -3' miRNA: 3'- -CUCGUGGUGaauGCGCCcGCUGguGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 483 | 0.71 | 0.293137 |
Target: 5'- cGGCACCGC---CGCGGuuGAUCGCCa -3' miRNA: 3'- cUCGUGGUGaauGCGCCcgCUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 23743 | 0.71 | 0.293137 |
Target: 5'- -cGCACCGCUgccgacguugUAUGCGaagcucacGGCGGCCGCg -3' miRNA: 3'- cuCGUGGUGA----------AUGCGC--------CCGCUGGUGg -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 3382 | 0.71 | 0.278729 |
Target: 5'- -cGCACUGC--GCGCGGGCGAUaUGCCu -3' miRNA: 3'- cuCGUGGUGaaUGCGCCCGCUG-GUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 27060 | 0.71 | 0.271738 |
Target: 5'- cGGCGCCACU---GCGGGCG-CCuuguCCa -3' miRNA: 3'- cUCGUGGUGAaugCGCCCGCuGGu---GG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 7812 | 0.72 | 0.26489 |
Target: 5'- cGGCGCCGCcg--GCGGGCuGAUCACUg -3' miRNA: 3'- cUCGUGGUGaaugCGCCCG-CUGGUGG- -5' |
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33097 | 3' | -57.1 | NC_007497.1 | + | 21279 | 0.73 | 0.232733 |
Target: 5'- -cGCGCUGCUggGCGCGgcGGCGGgCGCCg -3' miRNA: 3'- cuCGUGGUGAa-UGCGC--CCGCUgGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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