miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 5' -51.5 NC_007497.1 + 8423 0.66 0.831179
Target:  5'- -gGAGA--GCGUggGCAGAGCAaGCu -3'
miRNA:   3'- ggCUCUagUGCGuuCGUCUUGUgCGu -5'
33097 5' -51.5 NC_007497.1 + 28161 0.66 0.830244
Target:  5'- aCCGAcaGGUCAauCGCAuacucgacucgguAGCcGAACACGCc -3'
miRNA:   3'- -GGCU--CUAGU--GCGU-------------UCGuCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 16493 0.67 0.822677
Target:  5'- uUGGGAUCccgcugacgucggauGCGCcuugggugcggcagGuGCAGAACACGCAg -3'
miRNA:   3'- gGCUCUAG---------------UGCG--------------UuCGUCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 30145 0.67 0.821722
Target:  5'- cUCGGGAcCGCGguAGCGccACugGCAc -3'
miRNA:   3'- -GGCUCUaGUGCguUCGUcuUGugCGU- -5'
33097 5' -51.5 NC_007497.1 + 19372 0.67 0.821721
Target:  5'- uUCGAGAUCaACGCugcggacggAAGCGGAaaucgGCugGUg -3'
miRNA:   3'- -GGCUCUAG-UGCG---------UUCGUCU-----UGugCGu -5'
33097 5' -51.5 NC_007497.1 + 8452 0.67 0.821721
Target:  5'- gCGAuGGUCGCGUcGGCAGuuuuccAgGCGCAg -3'
miRNA:   3'- gGCU-CUAGUGCGuUCGUCu-----UgUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 15655 0.67 0.821721
Target:  5'- aCGGGAUCGCugGCAcGCGuuucGGGCGCGUg -3'
miRNA:   3'- gGCUCUAGUG--CGUuCGU----CUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 16977 0.67 0.812048
Target:  5'- cCUGAGA-CGCGCAcGUAcucGGGCACGUg -3'
miRNA:   3'- -GGCUCUaGUGCGUuCGU---CUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 8794 0.67 0.812048
Target:  5'- aUCGAGGcugCGCGCGGGUcgcuucgcGGAUACGCGg -3'
miRNA:   3'- -GGCUCUa--GUGCGUUCGu-------CUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 31237 0.67 0.802171
Target:  5'- gUCGAGccaucGUCggaaGCGCcgcccAGCAGGACACGCc -3'
miRNA:   3'- -GGCUC-----UAG----UGCGu----UCGUCUUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 8245 0.67 0.802171
Target:  5'- gCUGAGAagCGCGguGGCAGuagUugGCAu -3'
miRNA:   3'- -GGCUCUa-GUGCguUCGUCuu-GugCGU- -5'
33097 5' -51.5 NC_007497.1 + 17285 0.67 0.802171
Target:  5'- gCCGGGAgcugUCGuCGCAucGGCGG-ACAUGCc -3'
miRNA:   3'- -GGCUCU----AGU-GCGU--UCGUCuUGUGCGu -5'
33097 5' -51.5 NC_007497.1 + 29610 0.67 0.792101
Target:  5'- uUCGAgGGUCGUGUAcGGCgAGAGCGCGCGc -3'
miRNA:   3'- -GGCU-CUAGUGCGU-UCG-UCUUGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 18519 0.67 0.792101
Target:  5'- cCCGAcGAUU-CGCGAGCGGGucgAgGCGCu -3'
miRNA:   3'- -GGCU-CUAGuGCGUUCGUCU---UgUGCGu -5'
33097 5' -51.5 NC_007497.1 + 9161 0.67 0.791084
Target:  5'- gUCGGGccaGUUGCGCGGGCAGGACcuuaagaGCGUu -3'
miRNA:   3'- -GGCUC---UAGUGCGUUCGUCUUG-------UGCGu -5'
33097 5' -51.5 NC_007497.1 + 12217 0.67 0.789044
Target:  5'- gCUGAGAUCagcgccaucggGCGCGaccaugaugcucagGGCAGAGCuaggcCGCAg -3'
miRNA:   3'- -GGCUCUAG-----------UGCGU--------------UCGUCUUGu----GCGU- -5'
33097 5' -51.5 NC_007497.1 + 26222 0.67 0.78185
Target:  5'- aCGAGG-CGCGCccagAAGUAGAACAccugcccgacCGCAa -3'
miRNA:   3'- gGCUCUaGUGCG----UUCGUCUUGU----------GCGU- -5'
33097 5' -51.5 NC_007497.1 + 11434 0.67 0.78185
Target:  5'- cUCGAGAacaUCGaGC-AGCGGAuCGCGCAg -3'
miRNA:   3'- -GGCUCU---AGUgCGuUCGUCUuGUGCGU- -5'
33097 5' -51.5 NC_007497.1 + 37568 0.67 0.778742
Target:  5'- gCGAGAUCgaACGCAAuGCGGAcgggaguaccaccuGCccgGCGCAc -3'
miRNA:   3'- gGCUCUAG--UGCGUU-CGUCU--------------UG---UGCGU- -5'
33097 5' -51.5 NC_007497.1 + 10658 0.68 0.771431
Target:  5'- gUCGAGGaaaagUCGCGCGAGCuu-GCGCGa- -3'
miRNA:   3'- -GGCUCU-----AGUGCGUUCGucuUGUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.