miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33099 3' -51.5 NC_007497.1 + 41655 0.66 0.838824
Target:  5'- gGCGCcGUCC-GAGCGcGAGACaGAGc- -3'
miRNA:   3'- aCGCGuUAGGcCUCGC-CUUUG-CUUuu -5'
33099 3' -51.5 NC_007497.1 + 17040 0.66 0.838824
Target:  5'- cGCGCcgcAUCUgccaacgagacgGGGGCGGAAgggGCGGAAc -3'
miRNA:   3'- aCGCGu--UAGG------------CCUCGCCUU---UGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 1421 0.66 0.838824
Target:  5'- gGCGCAgcGUCCGauugcGCGGccACGGAAAg -3'
miRNA:   3'- aCGCGU--UAGGCcu---CGCCuuUGCUUUU- -5'
33099 3' -51.5 NC_007497.1 + 27236 0.66 0.819772
Target:  5'- cGCGCGGcUCCGGcuGGCccGGAuuggcuuGCGAGAAu -3'
miRNA:   3'- aCGCGUU-AGGCC--UCG--CCUu------UGCUUUU- -5'
33099 3' -51.5 NC_007497.1 + 18787 0.66 0.819772
Target:  5'- cUGCGCAGauacgCCGGcAGUGGAuuugugGugGAAGc -3'
miRNA:   3'- -ACGCGUUa----GGCC-UCGCCU------UugCUUUu -5'
33099 3' -51.5 NC_007497.1 + 40694 0.66 0.809911
Target:  5'- cGCGCGggCCGGAa--GGAACGGGAAg -3'
miRNA:   3'- aCGCGUuaGGCCUcgcCUUUGCUUUU- -5'
33099 3' -51.5 NC_007497.1 + 2070 0.66 0.799842
Target:  5'- aUGCGCGAgucguUCCGGu-CGGGAACGc--- -3'
miRNA:   3'- -ACGCGUU-----AGGCCucGCCUUUGCuuuu -5'
33099 3' -51.5 NC_007497.1 + 25730 0.66 0.799842
Target:  5'- uUGCGUcuuGAUCUGGuacgacGCGGAGACGc--- -3'
miRNA:   3'- -ACGCG---UUAGGCCu-----CGCCUUUGCuuuu -5'
33099 3' -51.5 NC_007497.1 + 17365 0.66 0.799842
Target:  5'- aUGCaGCAGUgCGGGGCGauGAGcggGCGAAGc -3'
miRNA:   3'- -ACG-CGUUAgGCCUCGC--CUU---UGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 21302 0.66 0.799842
Target:  5'- cGCGCcuUCUGGAG-GGuGACGAu-- -3'
miRNA:   3'- aCGCGuuAGGCCUCgCCuUUGCUuuu -5'
33099 3' -51.5 NC_007497.1 + 11875 0.67 0.788542
Target:  5'- uUGgGCucgCCGGAauaucugGCGGAAAUGGAGc -3'
miRNA:   3'- -ACgCGuuaGGCCU-------CGCCUUUGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 39815 0.67 0.779131
Target:  5'- aGCGCAG-CCGGgccAGaaGGGACGAAAGa -3'
miRNA:   3'- aCGCGUUaGGCC---UCgcCUUUGCUUUU- -5'
33099 3' -51.5 NC_007497.1 + 27582 0.68 0.724617
Target:  5'- cUGCGCGGgcggcUgCGGGGCGGccGCGAu-- -3'
miRNA:   3'- -ACGCGUU-----AgGCCUCGCCuuUGCUuuu -5'
33099 3' -51.5 NC_007497.1 + 27096 0.68 0.701999
Target:  5'- cGCGCcggcagCGGAGCGGAuACGGc-- -3'
miRNA:   3'- aCGCGuuag--GCCUCGCCUuUGCUuuu -5'
33099 3' -51.5 NC_007497.1 + 19045 0.68 0.701999
Target:  5'- aGCGgGAUgCGGAGCGGuauCGGc-- -3'
miRNA:   3'- aCGCgUUAgGCCUCGCCuuuGCUuuu -5'
33099 3' -51.5 NC_007497.1 + 6358 0.68 0.700859
Target:  5'- aGUgGCAAggagcacgucauuUCCGGAGCGGu-ACGAAGc -3'
miRNA:   3'- aCG-CGUU-------------AGGCCUCGCCuuUGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 17665 0.68 0.690569
Target:  5'- cGCGCAAggCGGGGCGGcgcaucGGCGGc-- -3'
miRNA:   3'- aCGCGUUagGCCUCGCCu-----UUGCUuuu -5'
33099 3' -51.5 NC_007497.1 + 36972 0.68 0.690569
Target:  5'- cGCGCAGUgaucagcccgCCGGcGGCgccGGAGGCGGAAc -3'
miRNA:   3'- aCGCGUUA----------GGCC-UCG---CCUUUGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 31820 0.69 0.667535
Target:  5'- cUGCGg---CCGGAGCGGcggcguccagaaGAACGAGAc -3'
miRNA:   3'- -ACGCguuaGGCCUCGCC------------UUUGCUUUu -5'
33099 3' -51.5 NC_007497.1 + 615 0.89 0.037988
Target:  5'- aUGCGaacUCCGGAGCGGAAACGAAAAa -3'
miRNA:   3'- -ACGCguuAGGCCUCGCCUUUGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.