Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 17650 | 0.66 | 0.452351 |
|
Target: 5'- gGCUCCgcgacACGgc-ACGAGGCCguacaUGGGCa -3' miRNA: 3'- -CGGGGa----UGCagaUGUUCCGGg----ACCCG- -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 9117 | 0.67 | 0.385426 |
|
Target: 5'- gGCCauggaACG-CUugGAaGCCCUGGGCg -3' miRNA: 3'- -CGGgga--UGCaGAugUUcCGGGACCCG- -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 9927 | 0.69 | 0.298826 |
|
Target: 5'- gGUCCgCUACGacccuuUCUGCGAGGauggcuugcugcaCCUGGGUg -3' miRNA: 3'- -CGGG-GAUGC------AGAUGUUCCg------------GGACCCG- -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 4099 | 0.7 | 0.265615 |
|
Target: 5'- aUCCC-ACcUCUACAGGGUCCUGGa- -3' miRNA: 3'- cGGGGaUGcAGAUGUUCCGGGACCcg -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 12017 | 0.71 | 0.20935 |
|
Target: 5'- aCCCugCUGCGUC--CAGGGCCCugcgacUGGGCu -3' miRNA: 3'- cGGG--GAUGCAGauGUUCCGGG------ACCCG- -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 11951 | 0.73 | 0.168265 |
|
Target: 5'- aGCCCa---GUC-GCAGGGCCCUGGacGCa -3' miRNA: 3'- -CGGGgaugCAGaUGUUCCGGGACC--CG- -5' |
|||||||
| 331 | 5' | -57.7 | AC_000010.1 | + | 15539 | 1.14 | 0.000147 |
|
Target: 5'- uGCCCCUACGUCUACAAGGCCCUGGGCa -3' miRNA: 3'- -CGGGGAUGCAGAUGUUCCGGGACCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home