Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33100 | 3' | -55.6 | NC_007497.1 | + | 890 | 1.1 | 0.000658 |
Target: 5'- uCGCAAUCCUCUGCCACGUCAGCCAGGc -3' miRNA: 3'- -GCGUUAGGAGACGGUGCAGUCGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 4844 | 0.74 | 0.238587 |
Target: 5'- gCGCcag-CUCUGCCGCGUCcAGCCGGu -3' miRNA: 3'- -GCGuuagGAGACGGUGCAG-UCGGUCc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 39771 | 0.72 | 0.324307 |
Target: 5'- cCGCGucGUCgaggaUCUGCUGCGUagCAGCCGGGu -3' miRNA: 3'- -GCGU--UAGg----AGACGGUGCA--GUCGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 12344 | 0.71 | 0.366248 |
Target: 5'- uGCGA-CCggcgGCCACGUCacggGGCCGGGc -3' miRNA: 3'- gCGUUaGGaga-CGGUGCAG----UCGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 29525 | 0.68 | 0.491411 |
Target: 5'- uGCGcgCCUC-GCgGCGcUCGGCCGGc -3' miRNA: 3'- gCGUuaGGAGaCGgUGC-AGUCGGUCc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 24037 | 0.67 | 0.544628 |
Target: 5'- aGC-GUCUUCUucGgCACGUCAGCCAu- -3' miRNA: 3'- gCGuUAGGAGA--CgGUGCAGUCGGUcc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 26127 | 0.67 | 0.565355 |
Target: 5'- aGUAGUCCUCguaUGCCGCcucaucgguaGUCGgcugccccugcacGCCGGGa -3' miRNA: 3'- gCGUUAGGAG---ACGGUG----------CAGU-------------CGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 32168 | 0.67 | 0.566452 |
Target: 5'- uCGCcAUCaUCUGCgaCGCGUCGGCCGu- -3' miRNA: 3'- -GCGuUAGgAGACG--GUGCAGUCGGUcc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 22940 | 0.66 | 0.610686 |
Target: 5'- cCGCuGUCgUC-GCCGCcccgcaugCGGCCAGGg -3' miRNA: 3'- -GCGuUAGgAGaCGGUGca------GUCGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 37612 | 0.66 | 0.610686 |
Target: 5'- aCGCGAUCga-UGaUCugGUCGGCCAGc -3' miRNA: 3'- -GCGUUAGgagAC-GGugCAGUCGGUCc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 43091 | 0.66 | 0.621815 |
Target: 5'- gCGCAAUCuCUUUGCgGCGcucCAGCaCGGa -3' miRNA: 3'- -GCGUUAG-GAGACGgUGCa--GUCG-GUCc -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 11660 | 0.66 | 0.632954 |
Target: 5'- uCGCAA-CCUCgcgcgGCC-CGgaaccggcaCGGCCGGGa -3' miRNA: 3'- -GCGUUaGGAGa----CGGuGCa--------GUCGGUCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 2521 | 0.66 | 0.655218 |
Target: 5'- uGCGGUCC--UGCCACuUCuGCCcGGg -3' miRNA: 3'- gCGUUAGGagACGGUGcAGuCGGuCC- -5' |
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33100 | 3' | -55.6 | NC_007497.1 | + | 23242 | 0.66 | 0.655218 |
Target: 5'- gCGCccacgCCUCUGCCGC---AGCCGGu -3' miRNA: 3'- -GCGuua--GGAGACGGUGcagUCGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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